Click here to switch to the map view.

The map label for this gene is yjgB [H]

Identifier: 116621697

GI number: 116621697

Start: 3260509

End: 3261522

Strand: Reverse

Name: yjgB [H]

Synonym: Acid_2579

Alternate gene names: 116621697

Gene position: 3261522-3260509 (Counterclockwise)

Preceding gene: 116621699

Following gene: 116621696

Centisome position: 32.73

GC content: 60.75

Gene sequence:

>1014_bases
ATGTCTGAAATTCGTGCATTGGCAGCCAAACAGGCGCATGGTAAGTTGGAACCCTTCTCGTATGATCCCGGACCCCTCGG
CGACGAGCAGGTGGAAATCGACGTACAGTATTGCGGAATCTGTCATTCCGATGTCGCCATGCTGAATAATGAGTGGCAAA
TGACGCAATACCCGTTCGTGCCGGGACACGAGGCAGTGGGCACGGTGCGCGCCGTGGGGAGCCACGCCAAAAGAGTCGCG
CCGGGGCAGACTGTGGGACTCGGTTGGAATGCGGGAAGCTGCATGTTCTGCCCGCAGTGCATGGCCGGGGATCACAATAT
GTGCCGCAACCTGGAGCAGACAATCGTGGGCAGGCACGGCGCCTTTGCCACGCGGGTACGCTGCCACTGGAGTTGGGCGT
CGCCGATCCCCAAGAGTGTGGATGTCGCGGTCGCCGGACCGCTGCTGTGCGGCGGCATTACGGTTTTCAATCCGCTGGTC
CAGTATGATGTCTCGCCTACGCACAAGGTCGGCGTAATCGGCATCGGCGGACTCGGCCATCTCGCGCTGCAATTCCTCAA
TAAGTGGGGCTGCGACGTGACGGCATTCACCAGTTCCGCAAACAAAGCCGACGAGGCGAAGAACATGGGCGCGCATCGGA
TCGTGGACACACATTCGGCGGAGGCGCTGGGCAAGATCGCGAGCTCTTTCGATTTCATTCTCTCCACCGTGACGGCGGAT
TTGAATTGGGACGCGTACCTGAAGGCGCTGGCGCCGAAAGGCCATCTGCACATCGTAGGCGTCACACCCGACCCGATTCC
CGTGCCCGCGTTCACGGTGGTGGCGGCGCAAAGGTCGGTGGGCGGCTCGCCCTCCGGTTCTCCGCGGACAGTAGACAAGA
TGCTCGATTTCTGCGCCCGGCACGGCGTCAAACCGGTGACCGAGCAGTTTCCGATGAGCAAGGCCAACGAAGCGCTGGCC
CACCTGGAGGCGGGCAAGGCGAGATATCGTATCGTATTAAAGAACGACTTATGA

Upstream 100 bases:

>100_bases
GAGAAACTGGCGTCGGTTCATGGGGTGGTCACCGGATTCCGATTCACCATAGCAGAATGAGAGATTGAATCGGCGAAACG
CCAGGGTGCATCCTACGACC

Downstream 100 bases:

>100_bases
AATACTTCCTGGCCAAAACCGAACCTTCGGTCTATTCGATCGACGACCTGGAGCGCGATCAAGAAACGGTATGGGATGGC
GTGACCAACCCGCAGGCGGT

Product: alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MSEIRALAAKQAHGKLEPFSYDPGPLGDEQVEIDVQYCGICHSDVAMLNNEWQMTQYPFVPGHEAVGTVRAVGSHAKRVA
PGQTVGLGWNAGSCMFCPQCMAGDHNMCRNLEQTIVGRHGAFATRVRCHWSWASPIPKSVDVAVAGPLLCGGITVFNPLV
QYDVSPTHKVGVIGIGGLGHLALQFLNKWGCDVTAFTSSANKADEAKNMGAHRIVDTHSAEALGKIASSFDFILSTVTAD
LNWDAYLKALAPKGHLHIVGVTPDPIPVPAFTVVAAQRSVGGSPSGSPRTVDKMLDFCARHGVKPVTEQFPMSKANEALA
HLEAGKARYRIVLKNDL

Sequences:

>Translated_337_residues
MSEIRALAAKQAHGKLEPFSYDPGPLGDEQVEIDVQYCGICHSDVAMLNNEWQMTQYPFVPGHEAVGTVRAVGSHAKRVA
PGQTVGLGWNAGSCMFCPQCMAGDHNMCRNLEQTIVGRHGAFATRVRCHWSWASPIPKSVDVAVAGPLLCGGITVFNPLV
QYDVSPTHKVGVIGIGGLGHLALQFLNKWGCDVTAFTSSANKADEAKNMGAHRIVDTHSAEALGKIASSFDFILSTVTAD
LNWDAYLKALAPKGHLHIVGVTPDPIPVPAFTVVAAQRSVGGSPSGSPRTVDKMLDFCARHGVKPVTEQFPMSKANEALA
HLEAGKARYRIVLKNDL
>Mature_336_residues
SEIRALAAKQAHGKLEPFSYDPGPLGDEQVEIDVQYCGICHSDVAMLNNEWQMTQYPFVPGHEAVGTVRAVGSHAKRVAP
GQTVGLGWNAGSCMFCPQCMAGDHNMCRNLEQTIVGRHGAFATRVRCHWSWASPIPKSVDVAVAGPLLCGGITVFNPLVQ
YDVSPTHKVGVIGIGGLGHLALQFLNKWGCDVTAFTSSANKADEAKNMGAHRIVDTHSAEALGKIASSFDFILSTVTADL
NWDAYLKALAPKGHLHIVGVTPDPIPVPAFTVVAAQRSVGGSPSGSPRTVDKMLDFCARHGVKPVTEQFPMSKANEALAH
LEAGKARYRIVLKNDL

Specific function: Unknown

COG id: COG1064

COG function: function code R; Zn-dependent alcohol dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the zinc-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI87082401, Length=339, Percent_Identity=48.377581120944, Blast_Score=322, Evalue=2e-89,
Organism=Escherichia coli, GI1786518, Length=344, Percent_Identity=36.9186046511628, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI87081918, Length=305, Percent_Identity=24.5901639344262, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788073, Length=276, Percent_Identity=26.8115942028986, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71988145, Length=337, Percent_Identity=29.3768545994065, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17562584, Length=319, Percent_Identity=26.6457680250784, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17562582, Length=344, Percent_Identity=25, Blast_Score=91, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323980, Length=328, Percent_Identity=28.9634146341463, Blast_Score=135, Evalue=8e-33,
Organism=Saccharomyces cerevisiae, GI6319949, Length=328, Percent_Identity=28.9634146341463, Blast_Score=132, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6319621, Length=342, Percent_Identity=27.4853801169591, Blast_Score=123, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6324486, Length=337, Percent_Identity=27.893175074184, Blast_Score=121, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6323961, Length=338, Percent_Identity=26.9230769230769, Blast_Score=115, Evalue=8e-27,
Organism=Saccharomyces cerevisiae, GI6323729, Length=320, Percent_Identity=25.625, Blast_Score=112, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR013154
- InterPro:   IPR002085
- InterPro:   IPR002328
- InterPro:   IPR006140
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF08240 ADH_N; PF00107 ADH_zinc_N [H]

EC number: NA

Molecular weight: Translated: 36042; Mature: 35910

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00059 ADH_ZINC ; PS00065 D_2_HYDROXYACID_DH_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIRALAAKQAHGKLEPFSYDPGPLGDEQVEIDVQYCGICHSDVAMLNNEWQMTQYPFV
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHEECCCHHHHHHHCCCCCEEECCCC
PGHEAVGTVRAVGSHAKRVAPGQTVGLGWNAGSCMFCPQCMAGDHNMCRNLEQTIVGRHG
CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECHHHHCCCHHHHHHHHHHHHCCCC
AFATRVRCHWSWASPIPKSVDVAVAGPLLCGGITVFNPLVQYDVSPTHKVGVIGIGGLGH
CEEEEEEEEECCCCCCCCCCEEEEECCHHHCCHHHHHHHHHCCCCCCCEEEEEEECCHHH
LALQFLNKWGCDVTAFTSSANKADEAKNMGAHRIVDTHSAEALGKIASSFDFILSTVTAD
HHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCC
LNWDAYLKALAPKGHLHIVGVTPDPIPVPAFTVVAAQRSVGGSPSGSPRTVDKMLDFCAR
CCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHEEEHHHHCCCCCCCCCHHHHHHHHHHHH
HGVKPVTEQFPMSKANEALAHLEAGKARYRIVLKNDL
CCCCHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCC
>Mature Secondary Structure 
SEIRALAAKQAHGKLEPFSYDPGPLGDEQVEIDVQYCGICHSDVAMLNNEWQMTQYPFV
CHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHEECCCHHHHHHHCCCCCEEECCCC
PGHEAVGTVRAVGSHAKRVAPGQTVGLGWNAGSCMFCPQCMAGDHNMCRNLEQTIVGRHG
CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEECHHHHCCCHHHHHHHHHHHHCCCC
AFATRVRCHWSWASPIPKSVDVAVAGPLLCGGITVFNPLVQYDVSPTHKVGVIGIGGLGH
CEEEEEEEEECCCCCCCCCCEEEEECCHHHCCHHHHHHHHHCCCCCCCEEEEEEECCHHH
LALQFLNKWGCDVTAFTSSANKADEAKNMGAHRIVDTHSAEALGKIASSFDFILSTVTAD
HHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCC
LNWDAYLKALAPKGHLHIVGVTPDPIPVPAFTVVAAQRSVGGSPSGSPRTVDKMLDFCAR
CCHHHHHHHHCCCCCEEEEECCCCCCCCCHHHEEEHHHHCCCCCCCCCHHHHHHHHHHHH
HGVKPVTEQFPMSKANEALAHLEAGKARYRIVLKNDL
CCCCHHHHHCCCCHHHHHHHHHHCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]