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The map label for this gene is cspE [C]

Identifier: 116621692

GI number: 116621692

Start: 3256252

End: 3256686

Strand: Reverse

Name: cspE [C]

Synonym: Acid_2574

Alternate gene names: 116621692

Gene position: 3256686-3256252 (Counterclockwise)

Preceding gene: 116621693

Following gene: 116621691

Centisome position: 32.68

GC content: 63.91

Gene sequence:

>435_bases
TTGAACGCACGTCAGAAACGGTTATTTGAAGAGGCCCGCAAGCGCAATCCGGACCTCAAGATTCCATCCGAGACTCAGCC
GCCCGCGGACTGGTCGGAGGCCGACCTCGCTTTGATCAAGCAGGGAGTCGGCGATAAGAGCAGCAAGCCGGCGACGCCCG
CCGCCGCTACCGGAGACGCCACGGGGGAGGCCCCCTCAGGCGAACAGAGCGGCAGTGTGGTCACCTATTTCGAGGCCAAG
GGATTCGGATTCCTGCGTCCCGACGATGGTGGAAGGGATATCTTCTTCCATGTATCGCGCCTGTCCGAGGGGTTGGCCAC
GGACTTGCGCCCGGGAACCCGGGTGCTCTATGAACTAGGCATGGACCGCACCGGGAAGATGGCTGCCAGCAGCCTAAGAA
TTCCGCCGCCGGCGGCGCCCGCCGCCGCGGAATAA

Upstream 100 bases:

>100_bases
CCCCCTGCCGAAAAGAAGGGCGCTCGCAGGAAAAAGGCCGTCGCGCCGGTGACAGCTTAGAGCTACAACTGAGCGCGAGG
GATTTTCGAGGATATTTTCG

Downstream 100 bases:

>100_bases
CCAGCTATACTAGAGGAACCGCACAAGGTCCCCCGCATGGCACACCTTGCGGGGTCGGTCTGTTCTCATGTTCGACAACT
TATCAGATAAACTCCAGCGG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNARQKRLFEEARKRNPDLKIPSETQPPADWSEADLALIKQGVGDKSSKPATPAAATGDATGEAPSGEQSGSVVTYFEAK
GFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYELGMDRTGKMAASSLRIPPPAAPAAAE

Sequences:

>Translated_144_residues
MNARQKRLFEEARKRNPDLKIPSETQPPADWSEADLALIKQGVGDKSSKPATPAAATGDATGEAPSGEQSGSVVTYFEAK
GFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYELGMDRTGKMAASSLRIPPPAAPAAAE
>Mature_144_residues
MNARQKRLFEEARKRNPDLKIPSETQPPADWSEADLALIKQGVGDKSSKPATPAAATGDATGEAPSGEQSGSVVTYFEAK
GFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYELGMDRTGKMAASSLRIPPPAAPAAAE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15313; Mature: 15313

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARQKRLFEEARKRNPDLKIPSETQPPADWSEADLALIKQGVGDKSSKPATPAAATGDA
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TGEAPSGEQSGSVVTYFEAKGFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYELG
CCCCCCCCCCCCEEEEEECCCCEEECCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHC
MDRTGKMAASSLRIPPPAAPAAAE
CCCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNARQKRLFEEARKRNPDLKIPSETQPPADWSEADLALIKQGVGDKSSKPATPAAATGDA
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TGEAPSGEQSGSVVTYFEAKGFGFLRPDDGGRDIFFHVSRLSEGLATDLRPGTRVLYELG
CCCCCCCCCCCCEEEEEECCCCEEECCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHC
MDRTGKMAASSLRIPPPAAPAAAE
CCCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA