| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is gcd [H]
Identifier: 116621675
GI number: 116621675
Start: 3237387
End: 3239438
Strand: Direct
Name: gcd [H]
Synonym: Acid_2557
Alternate gene names: 116621675
Gene position: 3237387-3239438 (Clockwise)
Preceding gene: 116621674
Following gene: 116621676
Centisome position: 32.49
GC content: 65.94
Gene sequence:
>2052_bases ATGCGAATTGGGAAAGCCGGCAGCTTCGTATGCTTCATGTGCCTGGCGGTGGCTGCGCCGGGACAGCCTGGCGCCAAGGA TGGCGAATGGCCTACTTACGGGGCCGACCTGCATAACAGCCGGTACCGGCCGCTGGACCAGATCAACTCCACCAACTTCA GCAAACTCGAGGTGGCCTGGCGATTCAAGACCGATAGCCTGGGCACGCGTCCCGAGTACAAGCTGGAAGGCACGCCGCTG ATGGTCAACGGCGTTGTGTACGCTACCGCAGGTTCGCGGCGAGCCGCCATCGCGCTGGACGCCGTCACGGGCGAATTGCT GTGGGTCCACGGCGAGCACGAGGGCGCGCGCGGCGCGGCGGCCCCGCGACAGCTTTCCGGGCGCGGCCTGGCCTACTGGA CGGACGGCAGGGAGGAGCGCATCCTCTACACCACGCCCGGTTACCGGCTGGTTGCGCTGGATGCGAAGACCGGCGCGCTG ATCCCCAGCTTCGGCAAGGGCGGCGTGGTGGATCTGAAGCTCGATGATAACCAGACGATTCTGCCCGACCTCACCACCGG CGAGATCGGCATCCAATCGGCGCCGGTGGTGGCGCGCGATGTGGTGATCGTGGGCGCGGCTTTCCGCGAGGGCATGACGC CAAAAAGCATGCGCAACAACAAGGGCTACGTCCGCGGGTTCAACGTGCGCACCGGCAAACGGCTGTGGATCTTCCATACG ATCCCGATGAAGGGCGAGTTTGGCGCGGACACGTGGGAGAAGGGCTCGAACGAATACACAGGGAACACCGGCGTGTGGAC GCAGATCTCGGTGGACGAGCAACTGGGGCTGGTCTACCTGCCGGTGGAATCGCCGACGGGCGATTACTACGGGGGGCACC GGCCGGGCAACAATCTCTTCGGCGAGAGCCTGGTCTGCGTTGACCTGGCGACGGGGCAGCGCAAATGGCATTACCAACTG GTGCACCATCCGCTGTGGGACATGGATATTTCCTCGGGGCCGCTGCTCGCCGATATCACGGTCAACGGGCGCGCAGTGAA GGCCGTGGCGCAACCAACCAAGCAGGGCTTCCTCTACGTGTTCGACCGTGTGACCGGCAAACCGGTCTGGCCTATGGAAG AGCGGCCGGTGGAGAAGGGGAGCGTGCCTGGCGAGTGGTACTCGCCGACGCAGCCGTTCCCCAGCAAACCGCCCGCCTAT AGCCGCAACGGCGTGATGAAGGAGGACCTGATCGATTTCACCGCCGCGATGCGCGACCAGGCGCTGACGCTGATTTCGAA GTACAAGATCGGGCCGGTCTACACGCCGCCGGTGGAGAGCCAACTGGAGGGGCCGCTGGCGACGCTGACGCTCGGCACCG CGAGCGGGGGCACCAATTGGCCGGGAGGCTCGTACGATCCGGAGACGCATATCGTATATGCGTACGCCTGTAACGCGTGC CTCACGCCGATCGGACTGGCGCGGCCGCCGAAGGAGATTTCGGACATGGATTTTGTGCAGGGCACGGCGGGGCAGCAAGT TCGCATGCGCCTGGGTCCGGGAGAGAATGTCGGCGCGGATTCGCCGCGCGCCGCCGCTCCTCCAGCGGGCGGTGGAGGCG GAGGCGGGGGCCTGACGGTGCAGGGGCTACCGCTGATGAAACCGCCGTATGCAACGATCTCCGCCATCCATCTGGATAAG GGCGAGATCATCTGGCAGGTCGCGCACGGGGAAACGCCGGACGCGATCCGCAATCATCCGGCGCTCAAAGGGCTGACGAT TCCGCGCACCGGGCAGTCCGGGTTCAACGTGGGGACGCTGGTGACGAAGACGCTGGTGATCGCGGGCGAGGGGCAGGTGA CCACCACGGCGGACCATCCGCGCGGTGCGATGCTGCGGGCCTACGACAAGGCTACGGGGAAGGAAGTCGGCGCGGTGTGG ATGCCGGCGCCGCAGACCGGGTCGCCGATGACTTACATGGCGAAAGGCAAGCAGTACATTATCGTGGCGGTGAGCGGCGG GCCGTACTCGGGCGAGTACCTGGCGTTCACGCTGCCGGCGGAGCCCCAATGA
Upstream 100 bases:
>100_bases CCCCTGGCCCGGATGCGCGTGAATCCGGGCTCCCTTCCTTTGGGCGCCGAAAACTGGAGTAAGCTGGACTGGATCATTGA TCCAGTGGGGAGGGAGCGCA
Downstream 100 bases:
>100_bases TCGGAAGAACGGCCGCGGCCTTAATAGCGGCGGCAATCGTGGGGTGGGGGCTGGCGCCGCGGTCAGTGTGGGACGGCGTC TATACCGAAGAGCAGGCCAA
Product: quinoprotein glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 683; Mature: 683
Protein sequence:
>683_residues MRIGKAGSFVCFMCLAVAAPGQPGAKDGEWPTYGADLHNSRYRPLDQINSTNFSKLEVAWRFKTDSLGTRPEYKLEGTPL MVNGVVYATAGSRRAAIALDAVTGELLWVHGEHEGARGAAAPRQLSGRGLAYWTDGREERILYTTPGYRLVALDAKTGAL IPSFGKGGVVDLKLDDNQTILPDLTTGEIGIQSAPVVARDVVIVGAAFREGMTPKSMRNNKGYVRGFNVRTGKRLWIFHT IPMKGEFGADTWEKGSNEYTGNTGVWTQISVDEQLGLVYLPVESPTGDYYGGHRPGNNLFGESLVCVDLATGQRKWHYQL VHHPLWDMDISSGPLLADITVNGRAVKAVAQPTKQGFLYVFDRVTGKPVWPMEERPVEKGSVPGEWYSPTQPFPSKPPAY SRNGVMKEDLIDFTAAMRDQALTLISKYKIGPVYTPPVESQLEGPLATLTLGTASGGTNWPGGSYDPETHIVYAYACNAC LTPIGLARPPKEISDMDFVQGTAGQQVRMRLGPGENVGADSPRAAAPPAGGGGGGGGLTVQGLPLMKPPYATISAIHLDK GEIIWQVAHGETPDAIRNHPALKGLTIPRTGQSGFNVGTLVTKTLVIAGEGQVTTTADHPRGAMLRAYDKATGKEVGAVW MPAPQTGSPMTYMAKGKQYIIVAVSGGPYSGEYLAFTLPAEPQ
Sequences:
>Translated_683_residues MRIGKAGSFVCFMCLAVAAPGQPGAKDGEWPTYGADLHNSRYRPLDQINSTNFSKLEVAWRFKTDSLGTRPEYKLEGTPL MVNGVVYATAGSRRAAIALDAVTGELLWVHGEHEGARGAAAPRQLSGRGLAYWTDGREERILYTTPGYRLVALDAKTGAL IPSFGKGGVVDLKLDDNQTILPDLTTGEIGIQSAPVVARDVVIVGAAFREGMTPKSMRNNKGYVRGFNVRTGKRLWIFHT IPMKGEFGADTWEKGSNEYTGNTGVWTQISVDEQLGLVYLPVESPTGDYYGGHRPGNNLFGESLVCVDLATGQRKWHYQL VHHPLWDMDISSGPLLADITVNGRAVKAVAQPTKQGFLYVFDRVTGKPVWPMEERPVEKGSVPGEWYSPTQPFPSKPPAY SRNGVMKEDLIDFTAAMRDQALTLISKYKIGPVYTPPVESQLEGPLATLTLGTASGGTNWPGGSYDPETHIVYAYACNAC LTPIGLARPPKEISDMDFVQGTAGQQVRMRLGPGENVGADSPRAAAPPAGGGGGGGGLTVQGLPLMKPPYATISAIHLDK GEIIWQVAHGETPDAIRNHPALKGLTIPRTGQSGFNVGTLVTKTLVIAGEGQVTTTADHPRGAMLRAYDKATGKEVGAVW MPAPQTGSPMTYMAKGKQYIIVAVSGGPYSGEYLAFTLPAEPQ >Mature_683_residues MRIGKAGSFVCFMCLAVAAPGQPGAKDGEWPTYGADLHNSRYRPLDQINSTNFSKLEVAWRFKTDSLGTRPEYKLEGTPL MVNGVVYATAGSRRAAIALDAVTGELLWVHGEHEGARGAAAPRQLSGRGLAYWTDGREERILYTTPGYRLVALDAKTGAL IPSFGKGGVVDLKLDDNQTILPDLTTGEIGIQSAPVVARDVVIVGAAFREGMTPKSMRNNKGYVRGFNVRTGKRLWIFHT IPMKGEFGADTWEKGSNEYTGNTGVWTQISVDEQLGLVYLPVESPTGDYYGGHRPGNNLFGESLVCVDLATGQRKWHYQL VHHPLWDMDISSGPLLADITVNGRAVKAVAQPTKQGFLYVFDRVTGKPVWPMEERPVEKGSVPGEWYSPTQPFPSKPPAY SRNGVMKEDLIDFTAAMRDQALTLISKYKIGPVYTPPVESQLEGPLATLTLGTASGGTNWPGGSYDPETHIVYAYACNAC LTPIGLARPPKEISDMDFVQGTAGQQVRMRLGPGENVGADSPRAAAPPAGGGGGGGGLTVQGLPLMKPPYATISAIHLDK GEIIWQVAHGETPDAIRNHPALKGLTIPRTGQSGFNVGTLVTKTLVIAGEGQVTTTADHPRGAMLRAYDKATGKEVGAVW MPAPQTGSPMTYMAKGKQYIIVAVSGGPYSGEYLAFTLPAEPQ
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=684, Percent_Identity=29.2397660818713, Blast_Score=237, Evalue=2e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 73239; Mature: 73239
Theoretical pI: Translated: 7.93; Mature: 7.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIGKAGSFVCFMCLAVAAPGQPGAKDGEWPTYGADLHNSRYRPLDQINSTNFSKLEVAW CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEE RFKTDSLGTRPEYKLEGTPLMVNGVVYATAGSRRAAIALDAVTGELLWVHGEHEGARGAA EEECCCCCCCCCEEECCCCEEEEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCCC APRQLSGRGLAYWTDGREERILYTTPGYRLVALDAKTGALIPSFGKGGVVDLKLDDNQTI CCHHHCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEE LPDLTTGEIGIQSAPVVARDVVIVGAAFREGMTPKSMRNNKGYVRGFNVRTGKRLWIFHT CCCCCCCCCCCCCCCEEEEEEEEEEEHHHCCCCCHHHCCCCCEEEEEEECCCCEEEEEEE IPMKGEFGADTWEKGSNEYTGNTGVWTQISVDEQLGLVYLPVESPTGDYYGGHRPGNNLF CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC GESLVCVDLATGQRKWHYQLVHHPLWDMDISSGPLLADITVNGRAVKAVAQPTKQGFLYV CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEE FDRVTGKPVWPMEERPVEKGSVPGEWYSPTQPFPSKPPAYSRNGVMKEDLIDFTAAMRDQ EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH ALTLISKYKIGPVYTPPVESQLEGPLATLTLGTASGGTNWPGGSYDPETHIVYAYACNAC HHHHHHHCCCCCEECCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC LTPIGLARPPKEISDMDFVQGTAGQQVRMRLGPGENVGADSPRAAAPPAGGGGGGGGLTV CCCCCCCCCCHHHCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE QGLPLMKPPYATISAIHLDKGEIIWQVAHGETPDAIRNHPALKGLTIPRTGQSGFNVGTL ECCCCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCEECCCCCCCCCCHHHE VTKTLVIAGEGQVTTTADHPRGAMLRAYDKATGKEVGAVWMPAPQTGSPMTYMAKGKQYI EEEEEEEECCCCEEECCCCCCCCEEEEEHHCCCCCCCEEEECCCCCCCCEEEEECCCEEE IVAVSGGPYSGEYLAFTLPAEPQ EEEECCCCCCCCEEEEECCCCCC >Mature Secondary Structure MRIGKAGSFVCFMCLAVAAPGQPGAKDGEWPTYGADLHNSRYRPLDQINSTNFSKLEVAW CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEE RFKTDSLGTRPEYKLEGTPLMVNGVVYATAGSRRAAIALDAVTGELLWVHGEHEGARGAA EEECCCCCCCCCEEECCCCEEEEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCCC APRQLSGRGLAYWTDGREERILYTTPGYRLVALDAKTGALIPSFGKGGVVDLKLDDNQTI CCHHHCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCEE LPDLTTGEIGIQSAPVVARDVVIVGAAFREGMTPKSMRNNKGYVRGFNVRTGKRLWIFHT CCCCCCCCCCCCCCCEEEEEEEEEEEHHHCCCCCHHHCCCCCEEEEEEECCCCEEEEEEE IPMKGEFGADTWEKGSNEYTGNTGVWTQISVDEQLGLVYLPVESPTGDYYGGHRPGNNLF CCCCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCC GESLVCVDLATGQRKWHYQLVHHPLWDMDISSGPLLADITVNGRAVKAVAQPTKQGFLYV CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCEEEE FDRVTGKPVWPMEERPVEKGSVPGEWYSPTQPFPSKPPAYSRNGVMKEDLIDFTAAMRDQ EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH ALTLISKYKIGPVYTPPVESQLEGPLATLTLGTASGGTNWPGGSYDPETHIVYAYACNAC HHHHHHHCCCCCEECCCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCC LTPIGLARPPKEISDMDFVQGTAGQQVRMRLGPGENVGADSPRAAAPPAGGGGGGGGLTV CCCCCCCCCCHHHCCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEE QGLPLMKPPYATISAIHLDKGEIIWQVAHGETPDAIRNHPALKGLTIPRTGQSGFNVGTL ECCCCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCEECCCCCCCCCCHHHE VTKTLVIAGEGQVTTTADHPRGAMLRAYDKATGKEVGAVWMPAPQTGSPMTYMAKGKQYI EEEEEEEECCCCEEECCCCCCCCEEEEEHHCCCCCCCEEEECCCCCCCCEEEEECCCEEE IVAVSGGPYSGEYLAFTLPAEPQ EEEECCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]