Click here to switch to the map view.

The map label for this gene is ygeK [C]

Identifier: 116621654

GI number: 116621654

Start: 3213845

End: 3214531

Strand: Reverse

Name: ygeK [C]

Synonym: Acid_2536

Alternate gene names: 116621654

Gene position: 3214531-3213845 (Counterclockwise)

Preceding gene: 116621658

Following gene: 116621653

Centisome position: 32.26

GC content: 62.59

Gene sequence:

>687_bases
ATGGCTCCCGGACAATCAATCGACGAAATCACACTCCTCCGCACCAGGCTGGCCGAGCTGGAAGCCGAGTTGGAACAACT
GAAACTCGAGCATAACGCTCAGCAGCGCTTCCGGGAACTTCTGGATGCCGCTCCCGTAATGACCTGGATGTCTGGCGCCG
ACGCCATGTGCACCTTTTTCAACCAAGCCTGGCTGGAGTTTCGCGGCCGGACCCTGGACGAAGAGACCGGCAACGGCTGG
GCCGAAGGCATCCATCCCGATGACCGCGATCTCTGCCTGGAAACCTACCTTAAGGCATTTTCCGCCCGCCAGCCCTTCCG
CGTCCAATACCGGATGCGCCGCGCCAACGGGGAATTCGCCTGGCTCGAAGACTCCGGTCTTCCCCGCCTCGAAGATGGCG
CCTTCGCCGGGTTCATCGGCACCGCGGTGGATATCAGCGACCGCCGCCGCCGCATGTTCACGCCCGACGAAGCATCTGTT
CGCCTGGTATTCGCCCTCACGGAGCGCGAGCGGCAAGTTCTGGTGCTGATCGCCGCCGGCAAATCCACCAAGGAAGCCGC
CGCCCAGCTGGGTATCAGTTATAAGACCGCCGACTCTCACCGCAGCCGGATCCTGGAAAAGCTTGGCGTCCACGAAACCG
CCAGCATGGTCCGGTACGCTATCCGCGCCGGCCTGATCGAAGCATGA

Upstream 100 bases:

>100_bases
CACCCCAGGAAAATAGCATTAAGAATCACAACAATAACTAATTTGGTACTTTACGCCTAGTAGTCATTGACCATATCATT
ACTTTTACACTGGAAACCAC

Downstream 100 bases:

>100_bases
TCGGGGCCTAGACGCTTCGCCCCTGGATGTCCAACACCTTCATGCAGCAGGCCATCGAGATGGCGGTGGCTAACGTGCGC
CGCGGGGGCGGCCCCTTCGC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAPGQSIDEITLLRTRLAELEAELEQLKLEHNAQQRFRELLDAAPVMTWMSGADAMCTFFNQAWLEFRGRTLDEETGNGW
AEGIHPDDRDLCLETYLKAFSARQPFRVQYRMRRANGEFAWLEDSGLPRLEDGAFAGFIGTAVDISDRRRRMFTPDEASV
RLVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRAGLIEA

Sequences:

>Translated_228_residues
MAPGQSIDEITLLRTRLAELEAELEQLKLEHNAQQRFRELLDAAPVMTWMSGADAMCTFFNQAWLEFRGRTLDEETGNGW
AEGIHPDDRDLCLETYLKAFSARQPFRVQYRMRRANGEFAWLEDSGLPRLEDGAFAGFIGTAVDISDRRRRMFTPDEASV
RLVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRAGLIEA
>Mature_227_residues
APGQSIDEITLLRTRLAELEAELEQLKLEHNAQQRFRELLDAAPVMTWMSGADAMCTFFNQAWLEFRGRTLDEETGNGWA
EGIHPDDRDLCLETYLKAFSARQPFRVQYRMRRANGEFAWLEDSGLPRLEDGAFAGFIGTAVDISDRRRRMFTPDEASVR
LVFALTERERQVLVLIAAGKSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRAGLIEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 25797; Mature: 25665

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGQSIDEITLLRTRLAELEAELEQLKLEHNAQQRFRELLDAAPVMTWMSGADAMCTFF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NQAWLEFRGRTLDEETGNGWAEGIHPDDRDLCLETYLKAFSARQPFRVQYRMRRANGEFA
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE
WLEDSGLPRLEDGAFAGFIGTAVDISDRRRRMFTPDEASVRLVFALTERERQVLVLIAAG
EECCCCCCCCCCCCHHHHHHHEECCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEECC
KSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRAGLIEA
CCHHHHHHHHCCCEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
APGQSIDEITLLRTRLAELEAELEQLKLEHNAQQRFRELLDAAPVMTWMSGADAMCTFF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
NQAWLEFRGRTLDEETGNGWAEGIHPDDRDLCLETYLKAFSARQPFRVQYRMRRANGEFA
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEE
WLEDSGLPRLEDGAFAGFIGTAVDISDRRRRMFTPDEASVRLVFALTERERQVLVLIAAG
EECCCCCCCCCCCCHHHHHHHEECCCHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEECC
KSTKEAAAQLGISYKTADSHRSRILEKLGVHETASMVRYAIRAGLIEA
CCHHHHHHHHCCCEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]