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The map label for this gene is ycdC [C]

Identifier: 116621481

GI number: 116621481

Start: 3009783

End: 3010415

Strand: Direct

Name: ycdC [C]

Synonym: Acid_2363

Alternate gene names: 116621481

Gene position: 3009783-3010415 (Clockwise)

Preceding gene: 116621480

Following gene: 116621482

Centisome position: 30.2

GC content: 59.87

Gene sequence:

>633_bases
ATGTCCGTAACCCCTCGTCTCTCAGCCCCGGATCGCCGTCGCCAGCTCCTCGAAACCGCGCTCGATCTCTTCTCGCGCAA
GGGCTTCGAGGGCACTACCACCAAGGAAATCGCCGCCGCCGCCGGAGTCACCGAAGCCATCATCTTCCGTCACTTCCCGA
ATAAACAGGCTCTCTACACCGCTGTGATCGATTTCCCGCACGAAGCCAGCGAGTTCGACCAGTGGATGGCGGAATGGAAA
AGCCACATGGACCGCGATGACGATGAAGCACTCATCAACTCCATCATCCGATGCGTCCTCACCAAATATCGCCAGGACGC
CCGGGTGCAGCGCATGCTCCTCTTCGCCGCGCTCGAGGGCCATCAGCTTGGCCTCGAACACAATCGCGAGAGGTCCTATC
CGATTTTCGAACTCTTGGTCCAATATGTCGCCCGCCGCCAAGCCGAAGGTGCGCTCCGTCGGTGCAACCCCCGCGCAATC
GTGGCCGCCGCCGCCGGCATGGCCGATCACTTCGGCATGATGACCGAGCTATTCGGATTCAAGCCGAATGCCGATGATCA
ACAGGTAGCCAGGGACTTCACCACCATCATGATGCACGGAATTGGGACCAACTCGACCACTCAGGGGAAATAG

Upstream 100 bases:

>100_bases
CCGCCGCCGACCCCGGTTCTTCCCCCGATTGCGATCCTCCTCACACAAATGAGGCCATTCCTATTGACCGTAAGTAAGTA
CTGACTTACAATGGGGTCTG

Downstream 100 bases:

>100_bases
TAATGAACCGACTTCTTCTTTCATCTCTTGCACTTGCTTCTGTATTCCTGATCTCTTGCTCGAAGAGCAAGGAGGTCACC
GCGGCCGGACCAGCCGCGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; TetR Family Transcriptional Regulator; Transcriptional Regulator TetR/AcrR Family; Transcriptional Regulator AcrR

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MSVTPRLSAPDRRRQLLETALDLFSRKGFEGTTTKEIAAAAGVTEAIIFRHFPNKQALYTAVIDFPHEASEFDQWMAEWK
SHMDRDDDEALINSIIRCVLTKYRQDARVQRMLLFAALEGHQLGLEHNRERSYPIFELLVQYVARRQAEGALRRCNPRAI
VAAAAGMADHFGMMTELFGFKPNADDQQVARDFTTIMMHGIGTNSTTQGK

Sequences:

>Translated_210_residues
MSVTPRLSAPDRRRQLLETALDLFSRKGFEGTTTKEIAAAAGVTEAIIFRHFPNKQALYTAVIDFPHEASEFDQWMAEWK
SHMDRDDDEALINSIIRCVLTKYRQDARVQRMLLFAALEGHQLGLEHNRERSYPIFELLVQYVARRQAEGALRRCNPRAI
VAAAAGMADHFGMMTELFGFKPNADDQQVARDFTTIMMHGIGTNSTTQGK
>Mature_209_residues
SVTPRLSAPDRRRQLLETALDLFSRKGFEGTTTKEIAAAAGVTEAIIFRHFPNKQALYTAVIDFPHEASEFDQWMAEWKS
HMDRDDDEALINSIIRCVLTKYRQDARVQRMLLFAALEGHQLGLEHNRERSYPIFELLVQYVARRQAEGALRRCNPRAIV
AAAAGMADHFGMMTELFGFKPNADDQQVARDFTTIMMHGIGTNSTTQGK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23804; Mature: 23673

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTPRLSAPDRRRQLLETALDLFSRKGFEGTTTKEIAAAAGVTEAIIFRHFPNKQALYT
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AVIDFPHEASEFDQWMAEWKSHMDRDDDEALINSIIRCVLTKYRQDARVQRMLLFAALEG
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HQLGLEHNRERSYPIFELLVQYVARRQAEGALRRCNPRAIVAAAAGMADHFGMMTELFGF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
KPNADDQQVARDFTTIMMHGIGTNSTTQGK
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SVTPRLSAPDRRRQLLETALDLFSRKGFEGTTTKEIAAAAGVTEAIIFRHFPNKQALYT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AVIDFPHEASEFDQWMAEWKSHMDRDDDEALINSIIRCVLTKYRQDARVQRMLLFAALEG
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HQLGLEHNRERSYPIFELLVQYVARRQAEGALRRCNPRAIVAAAAGMADHFGMMTELFGF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
KPNADDQQVARDFTTIMMHGIGTNSTTQGK
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA