Click here to switch to the map view.

The map label for this gene is rfbH [H]

Identifier: 116621367

GI number: 116621367

Start: 2872506

End: 2873834

Strand: Reverse

Name: rfbH [H]

Synonym: Acid_2248

Alternate gene names: 116621367

Gene position: 2873834-2872506 (Counterclockwise)

Preceding gene: 116621368

Following gene: 116621366

Centisome position: 28.84

GC content: 63.21

Gene sequence:

>1329_bases
GTGACCGGGCGTAAAGAGGAGCTGCGCAAACAAATACTGGATCTGGTGGGCGAGTACTGCGCGGAGGCCTTTCCGCCGCG
TCCCTTCATCCCCGGCGAATCGCCCGTGCCCGTGTCCGGCAGGGTCTTCGATGGCGGCGAAATGCGCCTGCTGGTCGATT
CGTCGCTCGATTTTTGGCTGACCACCGGCCGCTTCGCCGAACAGTTCGAAATGCAATTCGCGCGCTGGTTCGGCATTCGC
GAATGCGTCCTCGTAAACTCCGGCTCCTCGGCCAACCTGGTGGCGGTCTCCGCCCTCACATCGCCCAAACTCGGCGATCG
CCGTCTGCAGCCCGGCGATGAAGTCATCACGCTCGCGGCTGGTTTCCCCACCACCGTCAACCCCATCATCCAGAACAATC
TGGTGCCGGTCTTTATCGACGTCCACATCCCCACGTACAACGTAGACGTGACCCAACTGGAACAAGCCCTTTCGCCCCGC
ACGCGCGCCCTCTTTTTCGCGCACACGTTGGGCAATCCCTTCGATCTCGACGCCGTCAAGGACTTCGCCGCCCGCCACGA
CCTGTGGCTAATCGAGGATTGCTGCGACGCCGTGGGCGCCGTGTACCGCGGCCGCAAGGTCGGCACCTTCGGCGATCTGG
CCACTACCAGCTTTTACCCCGCGCATCACATCACCATGGGCGAAGGCGGCAGTGTCCTGATGGAAAAACCCCTGCTGCGC
ACCCTGGTCGAATCCTTCCGCGATTGGGGCCGCGATTGCTGGTGCGCTCCCGGCAAAGACAACACCTGCGGCAAGCGCTT
CGAATGGCAGCTCGGCGAGTTGCCCTGCGGCTACGATCACAAATACACGTACTCGCACATCGGCTATAACCTGAAGCTCA
CCGACATGCAGGCCGCGGTCGGCGTCGCCCAGCTCGACAAGCTGGAAGGTTTCATCCAGGCGCGCCGAGCCAATTTCCAT
CGCCTGCGCGAAGGCCTGCGCGATCTCGAAGAGCTCTTCGTTCTGCCTGAGGCCACGGCCGGCGCCGAGCCGAGCTGGTT
CGGTTTCCCGATCGCGGTTCGCGCCGGCGCTCCCTTCACGCGCAACCAGGTGATTCACGAATTGGAGAAGCGAAAGATCG
CCACCCGGCTCCTGTTCGGCGGCAACCTGGTGCGGCAGCCCGCCTACCGCGAGGTGGCCCATCGCGTGGCGGCGCCGCTC
GCTAACACCGATTTCATCATGAACCAGGTCTTCTGGATCGGCGTCTACCCCGGCATCACCTCCGCCATGATGGATTACAT
TCTCGAAAGCTTCCACGCCATTCCCCGAGCAGCCACGTCGGCGGGTTAA

Upstream 100 bases:

>100_bases
CTGACGGCGGAACGCGCAAAAACCATGCTGAACTGGTCGCCGCTATTTACCCTGGAGCAGGGCCTGCAACACACCATAGC
CTGGTATAAGGAGTTTCTCC

Downstream 100 bases:

>100_bases
AGGGCTCCATGCGGAACTCTCTGGAGCGCGATCTGGACCATGTGCTCTCCCACACCGAAGAGCTGTGGGCCGAGGTGCGC
GGCGAGCGGATCTTCATGAC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MTGRKEELRKQILDLVGEYCAEAFPPRPFIPGESPVPVSGRVFDGGEMRLLVDSSLDFWLTTGRFAEQFEMQFARWFGIR
ECVLVNSGSSANLVAVSALTSPKLGDRRLQPGDEVITLAAGFPTTVNPIIQNNLVPVFIDVHIPTYNVDVTQLEQALSPR
TRALFFAHTLGNPFDLDAVKDFAARHDLWLIEDCCDAVGAVYRGRKVGTFGDLATTSFYPAHHITMGEGGSVLMEKPLLR
TLVESFRDWGRDCWCAPGKDNTCGKRFEWQLGELPCGYDHKYTYSHIGYNLKLTDMQAAVGVAQLDKLEGFIQARRANFH
RLREGLRDLEELFVLPEATAGAEPSWFGFPIAVRAGAPFTRNQVIHELEKRKIATRLLFGGNLVRQPAYREVAHRVAAPL
ANTDFIMNQVFWIGVYPGITSAMMDYILESFHAIPRAATSAG

Sequences:

>Translated_442_residues
MTGRKEELRKQILDLVGEYCAEAFPPRPFIPGESPVPVSGRVFDGGEMRLLVDSSLDFWLTTGRFAEQFEMQFARWFGIR
ECVLVNSGSSANLVAVSALTSPKLGDRRLQPGDEVITLAAGFPTTVNPIIQNNLVPVFIDVHIPTYNVDVTQLEQALSPR
TRALFFAHTLGNPFDLDAVKDFAARHDLWLIEDCCDAVGAVYRGRKVGTFGDLATTSFYPAHHITMGEGGSVLMEKPLLR
TLVESFRDWGRDCWCAPGKDNTCGKRFEWQLGELPCGYDHKYTYSHIGYNLKLTDMQAAVGVAQLDKLEGFIQARRANFH
RLREGLRDLEELFVLPEATAGAEPSWFGFPIAVRAGAPFTRNQVIHELEKRKIATRLLFGGNLVRQPAYREVAHRVAAPL
ANTDFIMNQVFWIGVYPGITSAMMDYILESFHAIPRAATSAG
>Mature_441_residues
TGRKEELRKQILDLVGEYCAEAFPPRPFIPGESPVPVSGRVFDGGEMRLLVDSSLDFWLTTGRFAEQFEMQFARWFGIRE
CVLVNSGSSANLVAVSALTSPKLGDRRLQPGDEVITLAAGFPTTVNPIIQNNLVPVFIDVHIPTYNVDVTQLEQALSPRT
RALFFAHTLGNPFDLDAVKDFAARHDLWLIEDCCDAVGAVYRGRKVGTFGDLATTSFYPAHHITMGEGGSVLMEKPLLRT
LVESFRDWGRDCWCAPGKDNTCGKRFEWQLGELPCGYDHKYTYSHIGYNLKLTDMQAAVGVAQLDKLEGFIQARRANFHR
LREGLRDLEELFVLPEATAGAEPSWFGFPIAVRAGAPFTRNQVIHELEKRKIATRLLFGGNLVRQPAYREVAHRVAAPLA
NTDFIMNQVFWIGVYPGITSAMMDYILESFHAIPRAATSAG

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=381, Percent_Identity=28.6089238845144, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI2367285, Length=272, Percent_Identity=29.4117647058824, Blast_Score=105, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 49260; Mature: 49129

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGRKEELRKQILDLVGEYCAEAFPPRPFIPGESPVPVSGRVFDGGEMRLLVDSSLDFWL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCEEE
TTGRFAEQFEMQFARWFGIRECVLVNSGSSANLVAVSALTSPKLGDRRLQPGDEVITLAA
ECCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEC
GFPTTVNPIIQNNLVPVFIDVHIPTYNVDVTQLEQALSPRTRALFFAHTLGNPFDLDAVK
CCCCCCCHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCHHEEEEEECCCCCCCHHHHH
DFAARHDLWLIEDCCDAVGAVYRGRKVGTFGDLATTSFYPAHHITMGEGGSVLMEKPLLR
HHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHH
TLVESFRDWGRDCWCAPGKDNTCGKRFEWQLGELPCGYDHKYTYSHIGYNLKLTDMQAAV
HHHHHHHHCCCCEEECCCCCCCCCCCCCEECCCCCCCCCCCEEHHHCCEEEEEECHHHHH
GVAQLDKLEGFIQARRANFHRLREGLRDLEELFVLPEATAGAEPSWFGFPIAVRAGAPFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCH
RNQVIHELEKRKIATRLLFGGNLVRQPAYREVAHRVAAPLANTDFIMNQVFWIGVYPGIT
HHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCHHHHHHCEEEEEECCCHH
SAMMDYILESFHAIPRAATSAG
HHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure 
TGRKEELRKQILDLVGEYCAEAFPPRPFIPGESPVPVSGRVFDGGEMRLLVDSSLDFWL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCEEE
TTGRFAEQFEMQFARWFGIRECVLVNSGSSANLVAVSALTSPKLGDRRLQPGDEVITLAA
ECCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEC
GFPTTVNPIIQNNLVPVFIDVHIPTYNVDVTQLEQALSPRTRALFFAHTLGNPFDLDAVK
CCCCCCCHHHHCCCEEEEEEEECCCCCCCHHHHHHHHCCCHHEEEEEECCCCCCCHHHHH
DFAARHDLWLIEDCCDAVGAVYRGRKVGTFGDLATTSFYPAHHITMGEGGSVLMEKPLLR
HHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHHHHH
TLVESFRDWGRDCWCAPGKDNTCGKRFEWQLGELPCGYDHKYTYSHIGYNLKLTDMQAAV
HHHHHHHHCCCCEEECCCCCCCCCCCCCEECCCCCCCCCCCEEHHHCCEEEEEECHHHHH
GVAQLDKLEGFIQARRANFHRLREGLRDLEELFVLPEATAGAEPSWFGFPIAVRAGAPFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCH
RNQVIHELEKRKIATRLLFGGNLVRQPAYREVAHRVAAPLANTDFIMNQVFWIGVYPGIT
HHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHCCCCHHHHHHCEEEEEECCCHH
SAMMDYILESFHAIPRAATSAG
HHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]