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The map label for this gene is deoC [H]

Identifier: 116621324

GI number: 116621324

Start: 2825744

End: 2826487

Strand: Direct

Name: deoC [H]

Synonym: Acid_2205

Alternate gene names: 116621324

Gene position: 2825744-2826487 (Clockwise)

Preceding gene: 116621323

Following gene: 116621325

Centisome position: 28.35

GC content: 64.78

Gene sequence:

>744_bases
GTGCAGACATGCGCGCGGAATACGAAAGAAATTATCGCGGCGGGAGCATCGCGGGTATCGGCGAGCGAAAAGCTGACGCG
GATCGACCCGACGATCGCGGCGTTGATCGACCACACTATTTTGAAGGCCGACGCGACGCGCGAGGATGTGGTGAAGGTCT
GCCGCGAGGCGCGGCAGTACAGTTTCGCGAGCGTGTGCGTGAACCCGTACTGGGTGCCGCTGGTGCGGGCCGAACTGGCG
GGAACGCCAGTGAAGGTGTGCACGGTGGTGGGCTTTCCGCTGGGCGCGACCAGCACGGAGGCGAAGGTCTGCGAGACAGC
GGGTGCGATTCGCGGCGGGGCGCAGGAAATCGACATGGTGATCAACGTGGGCGCGCTGCGCTCCGGCGATACCGATGCGG
TGCGCAGCGATATCCAGGCGGTGGTGAAGGTGGCGCACGAAGCCGGGGCGATCGTAAAGGTCATTCTGGAGACGGCGCTG
CTGAACGATGACCAGAAGACGCTGGCGAGCCGGTTGTGTAAAATGGCGGGCGCGGATTTCGTGAAGACGTCCACGGGATT
CTCTACGTCCGGGGCCACGGCGCACGATATCGCTTTGATGCGCGCGGCGGTGGGTCCGGCGATGGGCGTGAAGGCGTCGG
GCGGAATTCGTACGCTCGAGGATGTGCAGACGATGACGGCCGCTGGCGCTTCGCGAATCGGGGCGAGCGCGAGCGTAAAG
ATCGTAGAGGCTACCGCTGCCTGA

Upstream 100 bases:

>100_bases
AGAGATTCTGGCCCGTGTGGGTCAGGGCGGCGGCGCGCCGAAGAAGGGCGAAGGGCTGAACCTGCCGAACGAAGTCTGCC
CGGGTTGCGTGCAGCGCTGC

Downstream 100 bases:

>100_bases
TCAATTTCCGTTAGGGAAGTCTATGCAAGCGACTCGCAAAGCGTCGGTCCGGTTCCGGGAACGCAGCGAGCTGCTCGATT
TTCTGCTGGAGGTTTCGGCT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MQTCARNTKEIIAAGASRVSASEKLTRIDPTIAALIDHTILKADATREDVVKVCREARQYSFASVCVNPYWVPLVRAELA
GTPVKVCTVVGFPLGATSTEAKVCETAGAIRGGAQEIDMVINVGALRSGDTDAVRSDIQAVVKVAHEAGAIVKVILETAL
LNDDQKTLASRLCKMAGADFVKTSTGFSTSGATAHDIALMRAAVGPAMGVKASGGIRTLEDVQTMTAAGASRIGASASVK
IVEATAA

Sequences:

>Translated_247_residues
MQTCARNTKEIIAAGASRVSASEKLTRIDPTIAALIDHTILKADATREDVVKVCREARQYSFASVCVNPYWVPLVRAELA
GTPVKVCTVVGFPLGATSTEAKVCETAGAIRGGAQEIDMVINVGALRSGDTDAVRSDIQAVVKVAHEAGAIVKVILETAL
LNDDQKTLASRLCKMAGADFVKTSTGFSTSGATAHDIALMRAAVGPAMGVKASGGIRTLEDVQTMTAAGASRIGASASVK
IVEATAA
>Mature_247_residues
MQTCARNTKEIIAAGASRVSASEKLTRIDPTIAALIDHTILKADATREDVVKVCREARQYSFASVCVNPYWVPLVRAELA
GTPVKVCTVVGFPLGATSTEAKVCETAGAIRGGAQEIDMVINVGALRSGDTDAVRSDIQAVVKVAHEAGAIVKVILETAL
LNDDQKTLASRLCKMAGADFVKTSTGFSTSGATAHDIALMRAAVGPAMGVKASGGIRTLEDVQTMTAAGASRIGASASVK
IVEATAA

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=214, Percent_Identity=33.6448598130841, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=34.2723004694836, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17533015, Length=218, Percent_Identity=31.1926605504587, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19922098, Length=139, Percent_Identity=35.2517985611511, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 25473; Mature: 25473

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTCARNTKEIIAAGASRVSASEKLTRIDPTIAALIDHTILKADATREDVVKVCREARQY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SFASVCVNPYWVPLVRAELAGTPVKVCTVVGFPLGATSTEAKVCETAGAIRGGAQEIDMV
HHHHHHCCCHHHHHHHHHHCCCCEEEHHEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
INVGALRSGDTDAVRSDIQAVVKVAHEAGAIVKVILETALLNDDQKTLASRLCKMAGADF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
VKTSTGFSTSGATAHDIALMRAAVGPAMGVKASGGIRTLEDVQTMTAAGASRIGASASVK
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
IVEATAA
EEEECCC
>Mature Secondary Structure
MQTCARNTKEIIAAGASRVSASEKLTRIDPTIAALIDHTILKADATREDVVKVCREARQY
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SFASVCVNPYWVPLVRAELAGTPVKVCTVVGFPLGATSTEAKVCETAGAIRGGAQEIDMV
HHHHHHCCCHHHHHHHHHHCCCCEEEHHEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHH
INVGALRSGDTDAVRSDIQAVVKVAHEAGAIVKVILETALLNDDQKTLASRLCKMAGADF
EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
VKTSTGFSTSGATAHDIALMRAAVGPAMGVKASGGIRTLEDVQTMTAAGASRIGASASVK
EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
IVEATAA
EEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA