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The map label for this gene is yfiK [H]

Identifier: 116621307

GI number: 116621307

Start: 2805493

End: 2806116

Strand: Reverse

Name: yfiK [H]

Synonym: Acid_2188

Alternate gene names: 116621307

Gene position: 2806116-2805493 (Counterclockwise)

Preceding gene: 116621308

Following gene: 116621306

Centisome position: 28.16

GC content: 64.26

Gene sequence:

>624_bases
ATGAATGAAAAAATCCGAATTCTCGTCGCTGAAGATCACCTGGTAGCGCGGGTGGGCGTGGTCACGATCGTCAACATGCA
GCCCGATATGACGGTGGTGGCGGAAGCCGCAAACGGACAGCAGGCGGTAGAAATGTACCGTCTCCACCAGCCGGATGTGA
GTCTGCTCGACCTGCGCATGCCCGGCATCGGCGGCGTGGAGGCCGCGATCGCGATCCGCGCCGAATTTGGCGGCGCGCGC
ATGATTGCCCTCACCACTTACGGCGGCGATGAGGACATACGCCGCGCGCTTGCCGCCGGAGTGCAGGCCTACCTGACGAA
GGACGTGCTGCACGATGAGCTGATCAAGGCGATCCGCGCCGTCCATGCCGGCCAGACCTATCTCCCCGCCGCGGTGGCGG
CGTCGCTGGCGGCGCAGCTGCCGCGGCCCGATCTCAGCGCCCGCGAAGTCCAGGTGCTTGGGCTGATCGTACGCGGCCTC
GCCAATAAGCAGATCGCGTTCACGCTCAGCATCGCCGAGCACACCGTGAAGAATCACGTGAAGAACATCCTGAGTAAACT
CGGCGTGCAGGACCGAACGCAGGCGGCGACGGCCGCCATCCAGCGCGGGATTATTCACCTGTAG

Upstream 100 bases:

>100_bases
TAATTGGAATGCGCGAACGCGCCGAACGGCTGGGCGGCGAATTGCGCCTGGCCAGCCATCCCGGCGAAGGGACTCAAGTC
GAAGTAACCGTACCGTTGCC

Downstream 100 bases:

>100_bases
ATCGCTCCCTGACGGTCGCGGTTCGCGGTGAGGGCGCATCCGCAGCCCGGTGAAGGCGCATCCGCTGCGTGCGGTGAAGG
CGCACCCGCTGCACGGTGAC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MNEKIRILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRMPGIGGVEAAIAIRAEFGGAR
MIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKAIRAVHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGL
ANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRGIIHL

Sequences:

>Translated_207_residues
MNEKIRILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRMPGIGGVEAAIAIRAEFGGAR
MIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKAIRAVHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGL
ANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRGIIHL
>Mature_207_residues
MNEKIRILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRMPGIGGVEAAIAIRAEFGGAR
MIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKAIRAVHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGL
ANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRGIIHL

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=205, Percent_Identity=35.1219512195122, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1787473, Length=213, Percent_Identity=38.4976525821596, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1788222, Length=210, Percent_Identity=30.4761904761905, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1790102, Length=192, Percent_Identity=32.8125, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786747, Length=195, Percent_Identity=22.5641025641026, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=25.4901960784314, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22186; Mature: 22186

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEKIRILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRM
CCCEEEEEEECCCHHEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEC
PGIGGVEAAIAIRAEFGGARMIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKAIRA
CCCCCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHV
HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
KNILSKLGVQDRTQAATAAIQRGIIHL
HHHHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNEKIRILVAEDHLVARVGVVTIVNMQPDMTVVAEAANGQQAVEMYRLHQPDVSLLDLRM
CCCEEEEEEECCCHHEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEEC
PGIGGVEAAIAIRAEFGGARMIALTTYGGDEDIRRALAAGVQAYLTKDVLHDELIKAIRA
CCCCCCCEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAGQTYLPAAVAASLAAQLPRPDLSAREVQVLGLIVRGLANKQIAFTLSIAEHTVKNHV
HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
KNILSKLGVQDRTQAATAAIQRGIIHL
HHHHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]