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The map label for this gene is araR [H]

Identifier: 116621197

GI number: 116621197

Start: 2641791

End: 2642918

Strand: Direct

Name: araR [H]

Synonym: Acid_2078

Alternate gene names: 116621197

Gene position: 2641791-2642918 (Clockwise)

Preceding gene: 116621190

Following gene: 116621198

Centisome position: 26.51

GC content: 60.2

Gene sequence:

>1128_bases
ATGTATCATCAACCTGTGAGCACTGAAGGGCCAAAGTACAAGCAGATCTGCCAGAATCTTAAAACGGCGATCGAGAGCGG
CACCTATGGAGCTGGCTTTCGGCTGCCGAGCGAGCATGAACTCGTACAAACGTTCGGAGCCTCGCGGGTTACCGTGAGTC
GTGCTCTGAAAGAACTTCAGATCGGCGGCCTGATCGATCGCCGGGCCGGCTCAGGGACGTATGTCCGAGCATCCACGGTC
AAACAGCATGCGTTCGGCCTTCTCATTCCCGAGTTGGGCCAGACCGAGATCTTCGAACCAATCTGCCAGGGAATGGTCGC
GGCGCAGGAAGCACACAATCACGTACTGATTTGGGGACGCTCGCTGGCAGGTTCGGAAACGACCGAGGCTGACGCGAAGG
ACGTCTGCGCCCGGCTGATTTCGAACCGCGTGTCCGGCGTGTTCTTCGCGCCGATCGAGGCAAACCCGCAGAAGGACGCG
ATCAACCGCATCATTTCCACGATGCTAAGCGACGCGAAGATCCCGATCGTGCTCCTGGACCGGGACATTGTGGATTATCC
GCAGCGGAGCAAGTTCGACGTCGTCGGCATTGACAACCGGAGAGCCGGGTGCGTGGCTACGCAACACCTGATCGACGCCG
GGTGCAGGCGCATCGGCTTCATCGGGAGGCCACACCTGGCGCCGAGTTGCGTCGCCCGTTGCAACGGTTACCGCGAGACC
GTAAGCAATTCCTCGATACCTCTGGCTCCCACATTCGCCGAGCGGTTGGATCCTTCCGACCCGATCCTTGTGGGAAAAGT
CATGGACCGGCATAAACCCGACGGGATCGTGTGTTCCAACGATCGGACGGCGGCTCTGTTGATGCGTACTTTTGCCACAC
TGAAGATCGCCGTCCCCGATCAGGTGCGGCTGGTGGCATTCGACGACGTAAAGTACGCAAGTCTGGTGACCGTGCCGTTA
ACGACGATTCACCAGCCGTGCGATCAATTAGGCGCGGCCGCCATTCAGGCGATGGTACAGCGCATCGAGTCACCCGATAT
GCCGCCCCGCGACATCCTGGTGGACTTCCACCTGGTAGTGCGCGAATCCTGCGGCGCGCGGATGGCGCGGGATCGCTCGT
CGAGTTAG

Upstream 100 bases:

>100_bases
GTTGTGTACCTTAATTGGTATTATCAATATTCCAGAAGCTCGATTCCAGTACTAATTGGGGACGCCCAGGTCCTTTCTGT
TGCCCTTTATAGCTGGAGAA

Downstream 100 bases:

>100_bases
GATTCTGCATGGATCGGCGCCGGTTTCTCCAAACCGCGGGTGCGGTGGGTGCATCGAAACGGATCCTGCAAGCCGCCGAA
GCCGATCCGGCTCTCGTCAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MYHQPVSTEGPKYKQICQNLKTAIESGTYGAGFRLPSEHELVQTFGASRVTVSRALKELQIGGLIDRRAGSGTYVRASTV
KQHAFGLLIPELGQTEIFEPICQGMVAAQEAHNHVLIWGRSLAGSETTEADAKDVCARLISNRVSGVFFAPIEANPQKDA
INRIISTMLSDAKIPIVLLDRDIVDYPQRSKFDVVGIDNRRAGCVATQHLIDAGCRRIGFIGRPHLAPSCVARCNGYRET
VSNSSIPLAPTFAERLDPSDPILVGKVMDRHKPDGIVCSNDRTAALLMRTFATLKIAVPDQVRLVAFDDVKYASLVTVPL
TTIHQPCDQLGAAAIQAMVQRIESPDMPPRDILVDFHLVVRESCGARMARDRSSS

Sequences:

>Translated_375_residues
MYHQPVSTEGPKYKQICQNLKTAIESGTYGAGFRLPSEHELVQTFGASRVTVSRALKELQIGGLIDRRAGSGTYVRASTV
KQHAFGLLIPELGQTEIFEPICQGMVAAQEAHNHVLIWGRSLAGSETTEADAKDVCARLISNRVSGVFFAPIEANPQKDA
INRIISTMLSDAKIPIVLLDRDIVDYPQRSKFDVVGIDNRRAGCVATQHLIDAGCRRIGFIGRPHLAPSCVARCNGYRET
VSNSSIPLAPTFAERLDPSDPILVGKVMDRHKPDGIVCSNDRTAALLMRTFATLKIAVPDQVRLVAFDDVKYASLVTVPL
TTIHQPCDQLGAAAIQAMVQRIESPDMPPRDILVDFHLVVRESCGARMARDRSSS
>Mature_375_residues
MYHQPVSTEGPKYKQICQNLKTAIESGTYGAGFRLPSEHELVQTFGASRVTVSRALKELQIGGLIDRRAGSGTYVRASTV
KQHAFGLLIPELGQTEIFEPICQGMVAAQEAHNHVLIWGRSLAGSETTEADAKDVCARLISNRVSGVFFAPIEANPQKDA
INRIISTMLSDAKIPIVLLDRDIVDYPQRSKFDVVGIDNRRAGCVATQHLIDAGCRRIGFIGRPHLAPSCVARCNGYRET
VSNSSIPLAPTFAERLDPSDPILVGKVMDRHKPDGIVCSNDRTAALLMRTFATLKIAVPDQVRLVAFDDVKYASLVTVPL
TTIHQPCDQLGAAAIQAMVQRIESPDMPPRDILVDFHLVVRESCGARMARDRSSS

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=272, Percent_Identity=25.3676470588235, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787948, Length=211, Percent_Identity=28.436018957346, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790369, Length=176, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789202, Length=155, Percent_Identity=28.3870967741935, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 40953; Mature: 40953

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50949 HTH_GNTR ; PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHQPVSTEGPKYKQICQNLKTAIESGTYGAGFRLPSEHELVQTFGASRVTVSRALKELQ
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
IGGLIDRRAGSGTYVRASTVKQHAFGLLIPELGQTEIFEPICQGMVAAQEAHNHVLIWGR
HCCCEECCCCCCCEEEHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
SLAGSETTEADAKDVCARLISNRVSGVFFAPIEANPQKDAINRIISTMLSDAKIPIVLLD
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEC
RDIVDYPQRSKFDVVGIDNRRAGCVATQHLIDAGCRRIGFIGRPHLAPSCVARCNGYRET
CHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
VSNSSIPLAPTFAERLDPSDPILVGKVMDRHKPDGIVCSNDRTAALLMRTFATLKIAVPD
HCCCCCCCCCHHHHHCCCCCCEEEEHHHHCCCCCCEEECCCCHHHHHHHHHHHEEEECCC
QVRLVAFDDVKYASLVTVPLTTIHQPCDQLGAAAIQAMVQRIESPDMPPRDILVDFHLVV
CEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RESCGARMARDRSSS
HHHHCHHHHHCCCCC
>Mature Secondary Structure
MYHQPVSTEGPKYKQICQNLKTAIESGTYGAGFRLPSEHELVQTFGASRVTVSRALKELQ
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
IGGLIDRRAGSGTYVRASTVKQHAFGLLIPELGQTEIFEPICQGMVAAQEAHNHVLIWGR
HCCCEECCCCCCCEEEHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
SLAGSETTEADAKDVCARLISNRVSGVFFAPIEANPQKDAINRIISTMLSDAKIPIVLLD
CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEC
RDIVDYPQRSKFDVVGIDNRRAGCVATQHLIDAGCRRIGFIGRPHLAPSCVARCNGYRET
CHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHH
VSNSSIPLAPTFAERLDPSDPILVGKVMDRHKPDGIVCSNDRTAALLMRTFATLKIAVPD
HCCCCCCCCCHHHHHCCCCCCEEEEHHHHCCCCCCEEECCCCHHHHHHHHHHHEEEECCC
QVRLVAFDDVKYASLVTVPLTTIHQPCDQLGAAAIQAMVQRIESPDMPPRDILVDFHLVV
CEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
RESCGARMARDRSSS
HHHHCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA