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The map label for this gene is ybaV [C]

Identifier: 116621169

GI number: 116621169

Start: 2604824

End: 2605270

Strand: Direct

Name: ybaV [C]

Synonym: Acid_2050

Alternate gene names: 116621169

Gene position: 2604824-2605270 (Clockwise)

Preceding gene: 116621166

Following gene: 116621176

Centisome position: 26.14

GC content: 61.74

Gene sequence:

>447_bases
ATGAGACGGCAATGGATATTTGGGGCGGCGTTGTGGATCGGCACGGCCATGGAGGCGCAGGGCGATGGCAAGGCGATTGT
GGAGCGCGCTTGCGCGAAGTGTCACGGAATGGCGTCTGTGGCCAGAGAGCGCAATACGAGGGGGCGATGGGCGGCGATCG
TAGATGATATGATTGCGCGCGGCGCGGACGTGAGCGACGCGGACTTCGACAAGGTAGTCGATTACCTGGCTGCGCGGTTC
GGACCGAAGACGAACGTGAACAGCGCCGTGGCCGAGGATCTAGCCGCCGGTACCGGTTTTTCGAAGGACGCTGCCGCCGC
GATTGTTGCGTACCGGCAGAAGAATGGGCCGTTCAAGTCGCTGGATGACTTGAAGAAGGTCCCCTCTTTGGACGCTGCCG
AGGTGGACAGTAAGAAAGACCGCCTGGAGTTTGGCGCCGCGAAGTAG

Upstream 100 bases:

>100_bases
TGGGCGGCGAATATTCCGGTGCGGATGTTGCTGCCTGCGAGAAAACAAGAGCAGTGTAATGCAGTGTAATACAAGGGAGG
GATATATTGGATGGGGCACG

Downstream 100 bases:

>100_bases
AGTTCACAGGGTCCAGACGCTATGGCCCTTCTGATAGAACGAGAGCTGGCCGCCTTCGCTGACCATCAGAACGCTGCCGA
ATTGGGAGGCGCCGATCGCG

Product: DNA uptake protein and related DNA-binding protein-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MRRQWIFGAALWIGTAMEAQGDGKAIVERACAKCHGMASVARERNTRGRWAAIVDDMIARGADVSDADFDKVVDYLAARF
GPKTNVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVDSKKDRLEFGAAK

Sequences:

>Translated_148_residues
MRRQWIFGAALWIGTAMEAQGDGKAIVERACAKCHGMASVARERNTRGRWAAIVDDMIARGADVSDADFDKVVDYLAARF
GPKTNVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVDSKKDRLEFGAAK
>Mature_148_residues
MRRQWIFGAALWIGTAMEAQGDGKAIVERACAKCHGMASVARERNTRGRWAAIVDDMIARGADVSDADFDKVVDYLAARF
GPKTNVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKSLDDLKKVPSLDAAEVDSKKDRLEFGAAK

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15865; Mature: 15865

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQWIFGAALWIGTAMEAQGDGKAIVERACAKCHGMASVARERNTRGRWAAIVDDMIAR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GADVSDADFDKVVDYLAARFGPKTNVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKS
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
LDDLKKVPSLDAAEVDSKKDRLEFGAAK
HHHHHHCCCCCHHHCCCHHHHHHCCCCC
>Mature Secondary Structure
MRRQWIFGAALWIGTAMEAQGDGKAIVERACAKCHGMASVARERNTRGRWAAIVDDMIAR
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GADVSDADFDKVVDYLAARFGPKTNVNSAVAEDLAAGTGFSKDAAAAIVAYRQKNGPFKS
CCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
LDDLKKVPSLDAAEVDSKKDRLEFGAAK
HHHHHHCCCCCHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA