Click here to switch to the map view.

The map label for this gene is xkdC [H]

Identifier: 116621115

GI number: 116621115

Start: 2523871

End: 2524629

Strand: Direct

Name: xkdC [H]

Synonym: Acid_1996

Alternate gene names: 116621115

Gene position: 2523871-2524629 (Clockwise)

Preceding gene: 116621114

Following gene: 116621116

Centisome position: 25.33

GC content: 62.45

Gene sequence:

>759_bases
ATGAAAGTAATGTCCACGCAACCCGTTTGCGGAAAGTGCGGCGGCACCGGCTGGATTATCATCGAGCGCGCCAATGTCTC
TGGCGCCGAGCCATGCGGTTGCCGCAACACCGGCCGTTCCGACCGGCTCGAAGAGCGCTCCCAGATTCCGCCGCTCTACC
GCAACACCGATTTTGAAAACTTCAAGACCGAGGGCGTCCAGGAACTCAAACAGGTCATGACGCTCGTCAAGAATTACGCC
GACGAGTTTCCGCTCGGCCCCTACCCCGGCCTGCTCCTCATCGGTGAACCGGGCACCGGCAAAACTCACCTCGCCGTGGC
CGCGCTCCGCCGCATCATCCAAAAGGGCTTCGAAGGCGTCTTCACCGATTATCAAACTCTGCTGGACCGCATCCGCTCCG
GCTACGATTCCAGCTCCAACTCTTCCGACAAAGAGGCCTACCGCATGGCACTCGATTCGGAAGTCCTGCTGCTGGACGAT
CTCGGCGCGCACCGCGTCACCGATTGGGTGCAGGACACCGTCACCAGCATCGTCACGCACCGCTGCAATAACCGGAAACC
GCTGATCGCCACTACCAACCTGCCCGACGTCGATGCCGGTAGCGCGGTGCTCCAGAAGACGCCCGTCGGCACCGAATACC
GGCGCACGCTCGCCGACCACATCGGCGCGCGCGCCCGCTCGCGCCTCTTCGAAATGTGCCGCGTGATCAAGATGCCGAAC
ATCGAGGATTACCGCATCCGCCGGGGTCGCCGGTTTTGA

Upstream 100 bases:

>100_bases
ATCGCCGCCTACCGCCAGTTTCTCCGCAAGCGCTTCTTGAAGTTTTCGTCTCACCGGCCCGGATAAAAGTGCCTGCTCCG
TGGAGGATCTGTGCACGATA

Downstream 100 bases:

>100_bases
ACCGCGCCGCCGCCCTGCTGCTGATCCTGCTCGCGCTTGCGGCTATGCCGGCGGGCGCCGCCGCCACCTACGTCCAGGTC
GTCGAGTTTCCTTATTACCT

Product: AAA ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKVMSTQPVCGKCGGTGWIIIERANVSGAEPCGCRNTGRSDRLEERSQIPPLYRNTDFENFKTEGVQELKQVMTLVKNYA
DEFPLGPYPGLLLIGEPGTGKTHLAVAALRRIIQKGFEGVFTDYQTLLDRIRSGYDSSSNSSDKEAYRMALDSEVLLLDD
LGAHRVTDWVQDTVTSIVTHRCNNRKPLIATTNLPDVDAGSAVLQKTPVGTEYRRTLADHIGARARSRLFEMCRVIKMPN
IEDYRIRRGRRF

Sequences:

>Translated_252_residues
MKVMSTQPVCGKCGGTGWIIIERANVSGAEPCGCRNTGRSDRLEERSQIPPLYRNTDFENFKTEGVQELKQVMTLVKNYA
DEFPLGPYPGLLLIGEPGTGKTHLAVAALRRIIQKGFEGVFTDYQTLLDRIRSGYDSSSNSSDKEAYRMALDSEVLLLDD
LGAHRVTDWVQDTVTSIVTHRCNNRKPLIATTNLPDVDAGSAVLQKTPVGTEYRRTLADHIGARARSRLFEMCRVIKMPN
IEDYRIRRGRRF
>Mature_252_residues
MKVMSTQPVCGKCGGTGWIIIERANVSGAEPCGCRNTGRSDRLEERSQIPPLYRNTDFENFKTEGVQELKQVMTLVKNYA
DEFPLGPYPGLLLIGEPGTGKTHLAVAALRRIIQKGFEGVFTDYQTLLDRIRSGYDSSSNSSDKEAYRMALDSEVLLLDD
LGAHRVTDWVQDTVTSIVTHRCNNRKPLIATTNLPDVDAGSAVLQKTPVGTEYRRTLADHIGARARSRLFEMCRVIKMPN
IEDYRIRRGRRF

Specific function: May function as a transcriptional antiterminator [H]

COG id: COG1484

COG function: function code L; DNA replication protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis yqaM [H]

Homologues:

Organism=Escherichia coli, GI1790823, Length=170, Percent_Identity=22.3529411764706, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787623, Length=156, Percent_Identity=27.5641025641026, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR002611 [H]

Pfam domain/function: PF01695 IstB [H]

EC number: NA

Molecular weight: Translated: 28269; Mature: 28269

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVMSTQPVCGKCGGTGWIIIERANVSGAEPCGCRNTGRSDRLEERSQIPPLYRNTDFEN
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHH
FKTEGVQELKQVMTLVKNYADEFPLGPYPGLLLIGEPGTGKTHLAVAALRRIIQKGFEGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
FTDYQTLLDRIRSGYDSSSNSSDKEAYRMALDSEVLLLDDLGAHRVTDWVQDTVTSIVTH
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH
RCNNRKPLIATTNLPDVDAGSAVLQKTPVGTEYRRTLADHIGARARSRLFEMCRVIKMPN
HCCCCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IEDYRIRRGRRF
CCHHHHHCCCCC
>Mature Secondary Structure
MKVMSTQPVCGKCGGTGWIIIERANVSGAEPCGCRNTGRSDRLEERSQIPPLYRNTDFEN
CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHH
FKTEGVQELKQVMTLVKNYADEFPLGPYPGLLLIGEPGTGKTHLAVAALRRIIQKGFEGV
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
FTDYQTLLDRIRSGYDSSSNSSDKEAYRMALDSEVLLLDDLGAHRVTDWVQDTVTSIVTH
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHH
RCNNRKPLIATTNLPDVDAGSAVLQKTPVGTEYRRTLADHIGARARSRLFEMCRVIKMPN
HCCCCCCEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IEDYRIRRGRRF
CCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8083174; 9384377 [H]