| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ylmA [H]
Identifier: 116620929
GI number: 116620929
Start: 2250090
End: 2250899
Strand: Reverse
Name: ylmA [H]
Synonym: Acid_1810
Alternate gene names: 116620929
Gene position: 2250899-2250090 (Counterclockwise)
Preceding gene: 116620930
Following gene: 116620927
Centisome position: 22.59
GC content: 62.72
Gene sequence:
>810_bases TTGCCCCCGGATAGCACGTACACTGGGGGCTTGACCCCTCTTCTTGAACTTGAAAACGTCAGCGTTCGCCGCGACGAACG CGTCGCGCTGGATAGTGTCACGCTCTCCATCGCACAGGGCGAGCATGTCGCCATCCTTGGCCCGAACGGGTCCGGCAAAT CCACGCTCATCAAGTTGATCTCGCGCGACCTCTATCCCATGCTCAAATCCGAGCCGTGGGCGCTACGCATTCTCGGCCGC GAACGCTGGCGGCTTTTCGATCTGCGCCACATTCTCGGGGTCGTCTCCAACGATTGGATGCAGATGTGCACACGCGACTA CTCCGGCCGCGAAATCGTGCTCTCCGGCTTCTTCGGCAGCGTCGGCATCTGGCCCAATCACCAGGTCACGGCCGCCATGG AAGCGAAGACGCGCGAGGTCATGGCGCTCCTCGAAATCTCGCACCTGGCCGGGCGCAACACCAACCAGATGTCGAGCGGC GAAGCGCGGCGCATCCTGATTGGGCGCGCGCTGGTGCACGATCCTCAGGCGCTCGTGCTCGATGAACCCTCTACCAGCCT CGACCTTCACGCCACCCACGAGCTCCGCGAATCGCTGCGGCGGCTGGCGCGAAACGGTATCAGCATCGTGATGGTGACGC ATCACCTGCCCGATATCATCCCGGAAATCGACCGCGTGGTGATGATCAAGCAGGGCCGCACCTACCGCGACGAACCCAAG CGCGAAGCCCTGACTTCAACGACGCTCTCCGGCCTCTTCGGCATCGATGTCGAAGTGCTGGAGCGCGGCGGCTACTACTC CAGTATGTGA
Upstream 100 bases:
>100_bases TGCGGAGAAAGAGGGACTATTGCCAAAGGGATTTCGTATGGAATGGATTACGAAGGCAGATTAGCGCCTTTCAGAGCCGT GACCGTTAGGGAGCGATCGC
Downstream 100 bases:
>100_bases CGGTACTCGTCCGGGTCGAGGCCGAAGCGCTCCATCTGGCGCGGCAGGTCGCTCTTGAGAGCTTCCGGCGTGAGACGCAC CCAGGCGGCGATCACGGTCT
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MPPDSTYTGGLTPLLELENVSVRRDERVALDSVTLSIAQGEHVAILGPNGSGKSTLIKLISRDLYPMLKSEPWALRILGR ERWRLFDLRHILGVVSNDWMQMCTRDYSGREIVLSGFFGSVGIWPNHQVTAAMEAKTREVMALLEISHLAGRNTNQMSSG EARRILIGRALVHDPQALVLDEPSTSLDLHATHELRESLRRLARNGISIVMVTHHLPDIIPEIDRVVMIKQGRTYRDEPK REALTSTTLSGLFGIDVEVLERGGYYSSM
Sequences:
>Translated_269_residues MPPDSTYTGGLTPLLELENVSVRRDERVALDSVTLSIAQGEHVAILGPNGSGKSTLIKLISRDLYPMLKSEPWALRILGR ERWRLFDLRHILGVVSNDWMQMCTRDYSGREIVLSGFFGSVGIWPNHQVTAAMEAKTREVMALLEISHLAGRNTNQMSSG EARRILIGRALVHDPQALVLDEPSTSLDLHATHELRESLRRLARNGISIVMVTHHLPDIIPEIDRVVMIKQGRTYRDEPK REALTSTTLSGLFGIDVEVLERGGYYSSM >Mature_268_residues PPDSTYTGGLTPLLELENVSVRRDERVALDSVTLSIAQGEHVAILGPNGSGKSTLIKLISRDLYPMLKSEPWALRILGRE RWRLFDLRHILGVVSNDWMQMCTRDYSGREIVLSGFFGSVGIWPNHQVTAAMEAKTREVMALLEISHLAGRNTNQMSSGE ARRILIGRALVHDPQALVLDEPSTSLDLHATHELRESLRRLARNGISIVMVTHHLPDIIPEIDRVVMIKQGRTYRDEPKR EALTSTTLSGLFGIDVEVLERGGYYSSM
Specific function: Probably Part Of A Binding-Protein-Dependent Transport System Ydcstuv. Probably Responsible For Energy Coupling To The Transport System. [C]
COG id: COG1119
COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI4505771, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI255708477, Length=242, Percent_Identity=29.7520661157025, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI9961252, Length=213, Percent_Identity=30.5164319248826, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI42741659, Length=244, Percent_Identity=31.5573770491803, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI42490749, Length=229, Percent_Identity=24.8908296943231, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI21536376, Length=218, Percent_Identity=28.8990825688073, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI156105685, Length=249, Percent_Identity=25.3012048192771, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=29.7872340425532, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788761, Length=262, Percent_Identity=29.7709923664122, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790544, Length=240, Percent_Identity=29.5833333333333, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=28.5106382978723, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786975, Length=233, Percent_Identity=31.3304721030043, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=25.2136752136752, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1787105, Length=252, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=29.004329004329, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1790739, Length=255, Percent_Identity=29.0196078431373, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=27.9661016949153, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790525, Length=253, Percent_Identity=25.6916996047431, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786345, Length=268, Percent_Identity=25.7462686567164, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=27.7056277056277, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786872, Length=195, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786319, Length=193, Percent_Identity=27.4611398963731, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=26.5822784810127, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=25.3393665158371, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786803, Length=262, Percent_Identity=24.4274809160305, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788002, Length=266, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=25.764192139738, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=256, Percent_Identity=28.515625, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1787500, Length=216, Percent_Identity=26.3888888888889, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=27.9279279279279, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786398, Length=228, Percent_Identity=25.8771929824561, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788506, Length=227, Percent_Identity=24.6696035242291, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789891, Length=234, Percent_Identity=25.2136752136752, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI87082268, Length=244, Percent_Identity=24.1803278688525, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17567269, Length=203, Percent_Identity=33.9901477832512, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI115534520, Length=229, Percent_Identity=27.9475982532751, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI193211015, Length=240, Percent_Identity=28.75, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115535101, Length=238, Percent_Identity=30.2521008403361, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193208177, Length=236, Percent_Identity=27.5423728813559, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71996809, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17567265, Length=205, Percent_Identity=33.6585365853659, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI193211017, Length=222, Percent_Identity=29.2792792792793, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17558664, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193202349, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533592, Length=219, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17541710, Length=207, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71992285, Length=214, Percent_Identity=25.2336448598131, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=24.5098039215686, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323959, Length=243, Percent_Identity=26.3374485596708, Blast_Score=70, Evalue=3e-13, Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=28.0172413793103, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24659289, Length=242, Percent_Identity=28.5123966942149, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI21357907, Length=234, Percent_Identity=28.2051282051282, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24653245, Length=210, Percent_Identity=29.5238095238095, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281363262, Length=210, Percent_Identity=29.5238095238095, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI85726357, Length=199, Percent_Identity=27.1356783919598, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641565, Length=232, Percent_Identity=28.0172413793103, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076682, Length=214, Percent_Identity=26.6355140186916, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI161076684, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581617, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24581615, Length=215, Percent_Identity=26.9767441860465, Blast_Score=68, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 30104; Mature: 29973
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPDSTYTGGLTPLLELENVSVRRDERVALDSVTLSIAQGEHVAILGPNGSGKSTLIKLI CCCCCCCCCCCCEEEEECCCCCCCCCCEEEEHEEEEEECCCEEEEECCCCCCHHHHHHHH SRDLYPMLKSEPWALRILGRERWRLFDLRHILGVVSNDWMQMCTRDYSGREIVLSGFFGS HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC VGIWPNHQVTAAMEAKTREVMALLEISHLAGRNTNQMSSGEARRILIGRALVHDPQALVL CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEE DEPSTSLDLHATHELRESLRRLARNGISIVMVTHHLPDIIPEIDRVVMIKQGRTYRDEPK ECCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEHHCHHHHHHHCEEEEEECCCCCCCCHH REALTSTTLSGLFGIDVEVLERGGYYSSM HHHHHHHHHHHHHCCCHHHHHCCCCCCCC >Mature Secondary Structure PPDSTYTGGLTPLLELENVSVRRDERVALDSVTLSIAQGEHVAILGPNGSGKSTLIKLI CCCCCCCCCCCEEEEECCCCCCCCCCEEEEHEEEEEECCCEEEEECCCCCCHHHHHHHH SRDLYPMLKSEPWALRILGRERWRLFDLRHILGVVSNDWMQMCTRDYSGREIVLSGFFGS HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC VGIWPNHQVTAAMEAKTREVMALLEISHLAGRNTNQMSSGEARRILIGRALVHDPQALVL CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCCCCEEEE DEPSTSLDLHATHELRESLRRLARNGISIVMVTHHLPDIIPEIDRVVMIKQGRTYRDEPK ECCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEHHCHHHHHHHCEEEEEECCCCCCCCHH REALTSTTLSGLFGIDVEVLERGGYYSSM HHHHHHHHHHHHHCCCHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]