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The map label for this gene is ycbB [H]

Identifier: 116620897

GI number: 116620897

Start: 2213545

End: 2214750

Strand: Direct

Name: ycbB [H]

Synonym: Acid_1778

Alternate gene names: 116620897

Gene position: 2213545-2214750 (Clockwise)

Preceding gene: 116620895

Following gene: 116620898

Centisome position: 22.21

GC content: 62.02

Gene sequence:

>1206_bases
ATGAGAGCACCGCTGTCCCGGTCATCTGTGTGGCTGACGCTGAGCGTGTTGATTCTTTCGTGCACGGTATTCCAACTGGG
ACAGGCGAGGCTGCGAAATCCGTCCGTCCCGCCCGACGAATATGAGCGCACGCTGCGTGCGCTGGACCAGTACCGCGCCC
TTGCGGCAGCGCCTGACGAAGTCTTCGTGCCCGTTACCGGGACCGTCAAACCGGGCGATGCTTACTCCGATGCGCCGCTC
CTGATTCGCCGCCTCTCGCTGCTCGGCGATCTTGCGGCGGACGCCGTTCCCTCGGATTCGGACGTGTATGAAGGCGAGCT
CGTGGAAGCCGTGAAACGTTTTCAATCCCGGCATGGGCTGAAACCGGATGGCCGCATCGAGGCCACCACGCTTGGCCAGC
TGAACGTGCCGCTCTGCGCGCGGGTTCGTCAATTGGAGCTCTCAGCGGAGCGGTGGCGCCGCCATCCCTACGATCCCACG
CGTCCCGCGATTGTTCTGAATCTGCCGGAATTTCGATTGCGCGCCTATGGCGGGACCGACGCCGGGTCCGATCCCGAGCT
GGAAATGAAGGTGGTAGTCGGCAAGGCTCCCGACCACAAGAGCCCCATTTTGCTTTCACAGCTCCAGGCGGTGATCTTCC
GGCCGTATTGGAAGGTGCCGGTCAGTATCCAACGTAACGAGCTGCTGCCGTTGATCCGGAAGGACCCTGCGTGGGTCTCG
GCCAACCGCTTCGAATTGGTCACTCCGCAGGGTGAAGTGGCGGAGGAGGAGAAGCTCTCGGAGGAAACGCTGGAGGACAT
CAGTACGGGCAAGTTGCAGCTCCGCCAAAAGCCGGGGCCCAAGAATTCCCTGGGGCTGGTGAAGTTCCTATTCCCCAACG
AATATGGCGTCTACATGCACGACACCGCGGCGCACTCGCTCTTCGCCCGCGAACGCCGCGATCTCAGTCACGGCTGCATC
CGCGTGGAGAAGCCGGAAGACCTGGCGGCGTGGGTGCTGCGCGAGCAATCCGACTGGCCGCGTGAGCGCATCGAGGAGGC
CATGCAGGGGACCGAACCTGTCTCCGTAAAGGTCAAGCGCCCGATTCAGATCGTGATGATGTACTCCACCGCCAGTGTCA
TGAAGAATGGCGAGGTTCACTTCTTCCGCGACATCTATGGCGAAGATGCAGTCCTCGAAAAAGAGCTGGCCGCGCGCCGG
AAATAA

Upstream 100 bases:

>100_bases
GCGATGTAGAAAAAGGGGTTGCCACGCGCCGCCGCCGCAAAAACTAACCCGCGCCAATCGCGTACGCCATCCAGAATCTC
AGTGGAGGTCGGAATCCATC

Downstream 100 bases:

>100_bases
TTGTCATGGACTCTCACCGCGGGCGCCGCGCCTTCCTTCGATTTCTCGCCGCCAGCCCCTATGTCGCCGCGCTTGGCGGC
ATCCGCGAATTCGCCGAAGG

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MRAPLSRSSVWLTLSVLILSCTVFQLGQARLRNPSVPPDEYERTLRALDQYRALAAAPDEVFVPVTGTVKPGDAYSDAPL
LIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTLGQLNVPLCARVRQLELSAERWRRHPYDPT
RPAIVLNLPEFRLRAYGGTDAGSDPELEMKVVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVS
ANRFELVTPQGEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFARERRDLSHGCI
RVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYSTASVMKNGEVHFFRDIYGEDAVLEKELAARR
K

Sequences:

>Translated_401_residues
MRAPLSRSSVWLTLSVLILSCTVFQLGQARLRNPSVPPDEYERTLRALDQYRALAAAPDEVFVPVTGTVKPGDAYSDAPL
LIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTLGQLNVPLCARVRQLELSAERWRRHPYDPT
RPAIVLNLPEFRLRAYGGTDAGSDPELEMKVVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVS
ANRFELVTPQGEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFARERRDLSHGCI
RVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYSTASVMKNGEVHFFRDIYGEDAVLEKELAARR
K
>Mature_401_residues
MRAPLSRSSVWLTLSVLILSCTVFQLGQARLRNPSVPPDEYERTLRALDQYRALAAAPDEVFVPVTGTVKPGDAYSDAPL
LIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTLGQLNVPLCARVRQLELSAERWRRHPYDPT
RPAIVLNLPEFRLRAYGGTDAGSDPELEMKVVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVS
ANRFELVTPQGEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFARERRDLSHGCI
RVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYSTASVMKNGEVHFFRDIYGEDAVLEKELAARR
K

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=295, Percent_Identity=34.5762711864407, Blast_Score=174, Evalue=7e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 45233; Mature: 45233

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPLSRSSVWLTLSVLILSCTVFQLGQARLRNPSVPPDEYERTLRALDQYRALAAAPDE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
VFVPVTGTVKPGDAYSDAPLLIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGL
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
KPDGRIEATTLGQLNVPLCARVRQLELSAERWRRHPYDPTRPAIVLNLPEFRLRAYGGTD
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHEEEEECCCC
AGSDPELEMKVVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVS
CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEC
ANRFELVTPQGEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMH
CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEE
DTAAHSLFARERRDLSHGCIRVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKR
CHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEC
PIQIVMMYSTASVMKNGEVHFFRDIYGEDAVLEKELAARRK
CEEEEEEEEHHHHHCCCCEEEEHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRAPLSRSSVWLTLSVLILSCTVFQLGQARLRNPSVPPDEYERTLRALDQYRALAAAPDE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
VFVPVTGTVKPGDAYSDAPLLIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGL
EEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
KPDGRIEATTLGQLNVPLCARVRQLELSAERWRRHPYDPTRPAIVLNLPEFRLRAYGGTD
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHEEEEECCCC
AGSDPELEMKVVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVS
CCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCEEC
ANRFELVTPQGEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMH
CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCEEEE
DTAAHSLFARERRDLSHGCIRVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKR
CHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEC
PIQIVMMYSTASVMKNGEVHFFRDIYGEDAVLEKELAARRK
CEEEEEEEEHHHHHCCCCEEEEHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]