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The map label for this gene is xpsD [H]

Identifier: 116620720

GI number: 116620720

Start: 1966342

End: 1967925

Strand: Reverse

Name: xpsD [H]

Synonym: Acid_1600

Alternate gene names: 116620720

Gene position: 1967925-1966342 (Counterclockwise)

Preceding gene: 116620723

Following gene: 116620718

Centisome position: 19.75

GC content: 62.37

Gene sequence:

>1584_bases
GTGCGGGTGCGTGTGTCCATTCTCGGATTTCTCCTGGCGGGCTGCCTCGCGTCCCAGCAACAACCTTCGGCAAACGATCT
CTACCTCAGGGGCCGGAAGGCGGAGCGCGCCGGCCACATGGCGGAGGCCTACCTCTTGTATTCGGAAGCGGCCGCCATGG
CTCCGAATAACCAGACGTACTGGCTGCGCAGCCAGGCGGTGAGCACCCGTGCCGCCCTGGAAGCCAAGGTCGCTCCCCCG
TCTGTCGCCCCCGGCGAAACCCCGGCGGCCGACGAAGACCCGGGTCCTCCGATCCCGATTGCCACCCGCGAAGATCTCGC
CGAGGTCCGCCGCCTGCTCCCCCCCACCGAATTGAAGGCCCAACCCGGGCGGCAGGATTTCGACCTGCGCCTGGACGCCA
AGGCGCTCTTCGAAAAGGTAGGCAAAGCCTTCGGCCTGGATTGCGTGTTCGACGACGATTTTCAAGCCGGCCCCGCCATC
CACTTCCTGATGAAGGACGTCGATTACCGCGACGCGCTCCATGGCCTGGAGGCGGCTACCGGTAGTTTCATCGTCCCGGT
CAGCAGCCGCGTATTCATGGTGGTCAAAGATACCCCCCAGAAGCGCATCGATCGCGAACCCACGGCCGCCATCGAGTTTC
AACTGCCGGACACAACCAATCCCCAGGATTTTAATTCCGTCATCACCGCCGTACAGCAGGCCTTCGCCATCGAAAAAGTC
GCCTTCGACACGCAGAACAACAGCGTGATCCTCCGCGATCGCGTCTCCAAGGTCATTCCGGCGCGGATGATGTTCGAAGA
ACTGATGGGTCCCCGGGCGGAGGTGGAAATCGAGCTCCGGTTTCTGGAGGTCAGCCTCAACGACGCCGTCACCTATGGTG
TTGACCTGGCTAATACGTTCAGCGTAATTCCTCTGCAAAATGCGTTCAATTTCGCCCAGCTGGCGAAAAGCCTCACCAGC
TCCAGCCTCTTCGGCATCAACATTCTCAGTTCCGCGATCGTGGCCACGATGTCGAATTCGTCCGGCAAGCTGCTGCTATC
CTCTGAGGTCCGCTCAGTCGATAACCAGCCGGCGACGCTCCACGTGGGAGACCGCTACCCGGTTCTGACCTCGGGCTATT
ACGGACCTCAGAGTTTCACCAACGGCGCCAACGCGTACACGCCGCCGCCTTCCTTCACCTTCGAGGATCTAGGCCTGACC
CTCAAAATCACCCCGGCGGTGCACGGGACCGAATCCGTGACGCTCGACATCGATTCCGAATTCAAGGTGCTTGCCGGCGG
CTCCGTCAACGGGATCCCCATCATCTCCAGCCGCGTCCTGAAGTCCAAAGCCGACCTCCGTTTTGGTGAATGGGCGGCAG
TCGCCGGACTGGTTGACCGGGACCAGGCGCGTACGATTGCAGGAATAGCCGGGGTCTCGCGCGTTCCCGTGCTCGGCCAG
TTGACCAGTACCCACACCAGGAATAAGGACGAGAGCCAGGTTCTCATCCTGATGCGCCCGCGGCTGCTAACACCGCCCCC
GGGCCAGGCGTTGTCCCACGCATTCCGCATGGGCTCGGACAACCGCCCGCTGACACCGCTGTAA

Upstream 100 bases:

>100_bases
CACGAATACCCGCCGGAAACCTGCGAATCCGCTCTTCATAGCACCAGATTCGCATATTAAATCGTTTGCACGCATAGATG
TGGCGGCGCGTCACACTAAT

Downstream 100 bases:

>100_bases
GCTCTACTTCTTCAGGATTTCCGCGATGGCCGCTTCGAGCAGCTCATCGCGGCCAGCGAGAATTCCAGCAATCGTCGGCT
TCACCTCGATATCCGGTACA

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MRVRVSILGFLLAGCLASQQQPSANDLYLRGRKAERAGHMAEAYLLYSEAAAMAPNNQTYWLRSQAVSTRAALEAKVAPP
SVAPGETPAADEDPGPPIPIATREDLAEVRRLLPPTELKAQPGRQDFDLRLDAKALFEKVGKAFGLDCVFDDDFQAGPAI
HFLMKDVDYRDALHGLEAATGSFIVPVSSRVFMVVKDTPQKRIDREPTAAIEFQLPDTTNPQDFNSVITAVQQAFAIEKV
AFDTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNFAQLAKSLTS
SSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLT
LKITPAVHGTESVTLDIDSEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQ
LTSTHTRNKDESQVLILMRPRLLTPPPGQALSHAFRMGSDNRPLTPL

Sequences:

>Translated_527_residues
MRVRVSILGFLLAGCLASQQQPSANDLYLRGRKAERAGHMAEAYLLYSEAAAMAPNNQTYWLRSQAVSTRAALEAKVAPP
SVAPGETPAADEDPGPPIPIATREDLAEVRRLLPPTELKAQPGRQDFDLRLDAKALFEKVGKAFGLDCVFDDDFQAGPAI
HFLMKDVDYRDALHGLEAATGSFIVPVSSRVFMVVKDTPQKRIDREPTAAIEFQLPDTTNPQDFNSVITAVQQAFAIEKV
AFDTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNFAQLAKSLTS
SSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLT
LKITPAVHGTESVTLDIDSEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQ
LTSTHTRNKDESQVLILMRPRLLTPPPGQALSHAFRMGSDNRPLTPL
>Mature_527_residues
MRVRVSILGFLLAGCLASQQQPSANDLYLRGRKAERAGHMAEAYLLYSEAAAMAPNNQTYWLRSQAVSTRAALEAKVAPP
SVAPGETPAADEDPGPPIPIATREDLAEVRRLLPPTELKAQPGRQDFDLRLDAKALFEKVGKAFGLDCVFDDDFQAGPAI
HFLMKDVDYRDALHGLEAATGSFIVPVSSRVFMVVKDTPQKRIDREPTAAIEFQLPDTTNPQDFNSVITAVQQAFAIEKV
AFDTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNFAQLAKSLTS
SSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLT
LKITPAVHGTESVTLDIDSEFKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQ
LTSTHTRNKDESQVLILMRPRLLTPPPGQALSHAFRMGSDNRPLTPL

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG4796

COG function: function code U; Type II secretory pathway, component HofQ

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=435, Percent_Identity=22.5287356321839, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 57121; Mature: 57121

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRVSILGFLLAGCLASQQQPSANDLYLRGRKAERAGHMAEAYLLYSEAAAMAPNNQTY
CEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCHHHHHEEEHHHHHCCCCCCEE
WLRSQAVSTRAALEAKVAPPSVAPGETPAADEDPGPPIPIATREDLAEVRRLLPPTELKA
EEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
QPGRQDFDLRLDAKALFEKVGKAFGLDCVFDDDFQAGPAIHFLMKDVDYRDALHGLEAAT
CCCCCCCCEEECHHHHHHHHHHHHCCEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHCC
GSFIVPVSSRVFMVVKDTPQKRIDREPTAAIEFQLPDTTNPQDFNSVITAVQQAFAIEKV
CCEEEEECCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
AFDTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTF
EEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCEEECEECCCCE
SVIPLQNAFNFAQLAKSLTSSSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATL
EEEECHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCEEEEHHHHHCCCCCCEE
HVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSE
EECCCCCEEECCCCCCHHCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEEEEECCC
FKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQ
EEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH
LTSTHTRNKDESQVLILMRPRLLTPPPGQALSHAFRMGSDNRPLTPL
HHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRVRVSILGFLLAGCLASQQQPSANDLYLRGRKAERAGHMAEAYLLYSEAAAMAPNNQTY
CEEEHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCHHHHHEEEHHHHHCCCCCCEE
WLRSQAVSTRAALEAKVAPPSVAPGETPAADEDPGPPIPIATREDLAEVRRLLPPTELKA
EEEHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
QPGRQDFDLRLDAKALFEKVGKAFGLDCVFDDDFQAGPAIHFLMKDVDYRDALHGLEAAT
CCCCCCCCEEECHHHHHHHHHHHHCCEEEECCCCCCCCEEEEHHHCCCHHHHHHHHHHCC
GSFIVPVSSRVFMVVKDTPQKRIDREPTAAIEFQLPDTTNPQDFNSVITAVQQAFAIEKV
CCEEEEECCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
AFDTQNNSVILRDRVSKVIPARMMFEELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTF
EEECCCCCEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCEEECEECCCCE
SVIPLQNAFNFAQLAKSLTSSSLFGINILSSAIVATMSNSSGKLLLSSEVRSVDNQPATL
EEEECHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCCEEEEHHHHHCCCCCCEE
HVGDRYPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSE
EECCCCCEEECCCCCCHHCCCCCCCCCCCCCCCHHHCCEEEEEECCCCCCCEEEEEECCC
FKVLAGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQ
EEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCHHH
LTSTHTRNKDESQVLILMRPRLLTPPPGQALSHAFRMGSDNRPLTPL
HHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]