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The map label for this gene is ybbK [C]

Identifier: 116620715

GI number: 116620715

Start: 1960689

End: 1961564

Strand: Direct

Name: ybbK [C]

Synonym: Acid_1595

Alternate gene names: 116620715

Gene position: 1960689-1961564 (Clockwise)

Preceding gene: 116620714

Following gene: 116620716

Centisome position: 19.67

GC content: 62.79

Gene sequence:

>876_bases
ATGAAACCGGATCTTTCGGCACTACGCGTGAGCCAGGTTGGTGTCGCGCTCTTTGTGATCTCGATGATCGCGGGGCTGGG
ACTTTCGGCGGCGCTGCAGAACCCCGTGCCGCTGGTGGCCTTCGGCCTGATCGGAGTGTACCTCTTGTTCGCGATCCGAA
TGGCGGACCAATGGGAGAAAGTGGCGGTGCTGCGCTTCGGGAAATTTACCGGCTTGCGGGGCCCCGGCCTGTTCCACATC
ATTCCGGTGGTCGATAGCCTGAGCCGCTACGTGGATCAGCGGGTCCGGGTGGCCAACGTCTCGGCTGAATCGACGCTCAC
GCGCGACACGGTGCCGGTGAACGTGGACGCGATCATCTTTTGGATGGTGTGGAATGCGGAGAAATCGATTCTCGAAGTGC
AGGACTTCACCGAGGCGATCCAGTTAAGCGCGCAGACGGCGCTGCGGGAATCGATCGGCCGCCACGAGCTGCACCAGATG
GTGGCGGAGCGCGAAATGATGGGCAAGGAACTACAGCGGATACTGGACGAGAAGACCACTCCGTGGGGCATTACGGTGCA
ATCGGTGGAGGTCCGCGACGTGCAGATCCCACTCGGTTTGCAAGACGCGATGTCGCGCGAGGCGCAGGCCGACCGCGAGC
GCCGGGCGCGCATCATCCTGGGGCAGGCGGAGACCGAGATCGCCGAGAAGTTCGGGCAGGCTGCGCTCACGTACCAGCAC
AATCCGGTGGCACTTCATTTGCGCGCGATGAACATGCTGTACGAAGCCATCAAGGAGAAGGGCTCGATGGTGATCGTGCC
TTCCTCGGCGGTGGAGACGATGGGACTGGGCGGAATGCTTGGCACCGCCTCGCTCGGCGGCGCCAAACCGCAATAG

Upstream 100 bases:

>100_bases
TTTGTCTCGCGGGCCGGGGCTTCGGGCTTTAAGGTTGACGAACTTATGGAGGAACTGAATGAGCGTTCCATCGATGCTGG
GAAAAAGAGGAGATAAGGCA

Downstream 100 bases:

>100_bases
GGGAGTTGCGACCGTGAAGGGGTCCTCTGGGGTCCGCGGGTCCACGAGCCGAAACTGAGGGCGTGGTCGCTTGGCGCGCA
CTGACTCACGCGGAAGTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKPDLSALRVSQVGVALFVISMIAGLGLSAALQNPVPLVAFGLIGVYLLFAIRMADQWEKVAVLRFGKFTGLRGPGLFHI
IPVVDSLSRYVDQRVRVANVSAESTLTRDTVPVNVDAIIFWMVWNAEKSILEVQDFTEAIQLSAQTALRESIGRHELHQM
VAEREMMGKELQRILDEKTTPWGITVQSVEVRDVQIPLGLQDAMSREAQADRERRARIILGQAETEIAEKFGQAALTYQH
NPVALHLRAMNMLYEAIKEKGSMVIVPSSAVETMGLGGMLGTASLGGAKPQ

Sequences:

>Translated_291_residues
MKPDLSALRVSQVGVALFVISMIAGLGLSAALQNPVPLVAFGLIGVYLLFAIRMADQWEKVAVLRFGKFTGLRGPGLFHI
IPVVDSLSRYVDQRVRVANVSAESTLTRDTVPVNVDAIIFWMVWNAEKSILEVQDFTEAIQLSAQTALRESIGRHELHQM
VAEREMMGKELQRILDEKTTPWGITVQSVEVRDVQIPLGLQDAMSREAQADRERRARIILGQAETEIAEKFGQAALTYQH
NPVALHLRAMNMLYEAIKEKGSMVIVPSSAVETMGLGGMLGTASLGGAKPQ
>Mature_291_residues
MKPDLSALRVSQVGVALFVISMIAGLGLSAALQNPVPLVAFGLIGVYLLFAIRMADQWEKVAVLRFGKFTGLRGPGLFHI
IPVVDSLSRYVDQRVRVANVSAESTLTRDTVPVNVDAIIFWMVWNAEKSILEVQDFTEAIQLSAQTALRESIGRHELHQM
VAEREMMGKELQRILDEKTTPWGITVQSVEVRDVQIPLGLQDAMSREAQADRERRARIILGQAETEIAEKFGQAALTYQH
NPVALHLRAMNMLYEAIKEKGSMVIVPSSAVETMGLGGMLGTASLGGAKPQ

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=238, Percent_Identity=33.6134453781513, Blast_Score=136, Evalue=2e-32,
Organism=Homo sapiens, GI221316744, Length=232, Percent_Identity=32.7586206896552, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI21686995, Length=231, Percent_Identity=32.9004329004329, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI7657615, Length=220, Percent_Identity=29.5454545454545, Blast_Score=118, Evalue=8e-27,
Organism=Homo sapiens, GI7305503, Length=173, Percent_Identity=28.9017341040462, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI20149563, Length=154, Percent_Identity=27.9220779220779, Blast_Score=79, Evalue=3e-15,
Organism=Escherichia coli, GI1786697, Length=184, Percent_Identity=33.1521739130435, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17569493, Length=237, Percent_Identity=33.7552742616034, Blast_Score=147, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI71987612, Length=232, Percent_Identity=36.2068965517241, Blast_Score=147, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI25153583, Length=232, Percent_Identity=36.2068965517241, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI193209764, Length=237, Percent_Identity=33.7552742616034, Blast_Score=146, Evalue=1e-35,
Organism=Caenorhabditis elegans, GI71987621, Length=232, Percent_Identity=36.2068965517241, Blast_Score=145, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17569499, Length=234, Percent_Identity=35.042735042735, Blast_Score=143, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17570459, Length=226, Percent_Identity=34.070796460177, Blast_Score=139, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI32566490, Length=217, Percent_Identity=35.0230414746544, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI193210507, Length=222, Percent_Identity=35.5855855855856, Blast_Score=130, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17570161, Length=222, Percent_Identity=35.5855855855856, Blast_Score=130, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI71989948, Length=222, Percent_Identity=32.8828828828829, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17569497, Length=224, Percent_Identity=29.9107142857143, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI71989955, Length=159, Percent_Identity=34.5911949685535, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI32564147, Length=171, Percent_Identity=28.6549707602339, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71989963, Length=120, Percent_Identity=34.1666666666667, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17542664, Length=203, Percent_Identity=24.6305418719212, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI62484448, Length=222, Percent_Identity=36.9369369369369, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI62484274, Length=222, Percent_Identity=36.9369369369369, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI18860517, Length=225, Percent_Identity=34.6666666666667, Blast_Score=142, Evalue=2e-34,
Organism=Drosophila melanogaster, GI281365664, Length=222, Percent_Identity=36.9369369369369, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24657857, Length=222, Percent_Identity=36.9369369369369, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI281361631, Length=221, Percent_Identity=31.6742081447964, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI281361633, Length=221, Percent_Identity=31.6742081447964, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI21356845, Length=225, Percent_Identity=29.3333333333333, Blast_Score=135, Evalue=2e-32,
Organism=Drosophila melanogaster, GI45556022, Length=226, Percent_Identity=34.070796460177, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI28573263, Length=222, Percent_Identity=29.7297297297297, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI281361635, Length=174, Percent_Identity=31.0344827586207, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI45550506, Length=178, Percent_Identity=29.7752808988764, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 31947; Mature: 31947

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDLSALRVSQVGVALFVISMIAGLGLSAALQNPVPLVAFGLIGVYLLFAIRMADQWEK
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAVLRFGKFTGLRGPGLFHIIPVVDSLSRYVDQRVRVANVSAESTLTRDTVPVNVDAIIF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHEEEE
WMVWNAEKSILEVQDFTEAIQLSAQTALRESIGRHELHQMVAEREMMGKELQRILDEKTT
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWGITVQSVEVRDVQIPLGLQDAMSREAQADRERRARIILGQAETEIAEKFGQAALTYQH
CCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCEEEECC
NPVALHLRAMNMLYEAIKEKGSMVIVPSSAVETMGLGGMLGTASLGGAKPQ
CCEEEHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPDLSALRVSQVGVALFVISMIAGLGLSAALQNPVPLVAFGLIGVYLLFAIRMADQWEK
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VAVLRFGKFTGLRGPGLFHIIPVVDSLSRYVDQRVRVANVSAESTLTRDTVPVNVDAIIF
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHEEEE
WMVWNAEKSILEVQDFTEAIQLSAQTALRESIGRHELHQMVAEREMMGKELQRILDEKTT
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PWGITVQSVEVRDVQIPLGLQDAMSREAQADRERRARIILGQAETEIAEKFGQAALTYQH
CCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHCCCEEEECC
NPVALHLRAMNMLYEAIKEKGSMVIVPSSAVETMGLGGMLGTASLGGAKPQ
CCEEEHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]