Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 116620714

GI number: 116620714

Start: 1960283

End: 1960684

Strand: Direct

Name: ytrA [H]

Synonym: Acid_1594

Alternate gene names: 116620714

Gene position: 1960283-1960684 (Clockwise)

Preceding gene: 116620711

Following gene: 116620715

Centisome position: 19.67

GC content: 60.2

Gene sequence:

>402_bases
ATGAGGGTTACGTTCCAATTGCGGTTGGATTTGCAGAGCGGCGTCCCGGTTTACCGGCAGATCATCGACCAGGTACTTGG
CGGGGTGGCGGCGGGGACGCTGGAGCCCGGTGACCAACTGCCCACGGTGCGACAGGTGGCGGTGGACCTTTCCATCAATC
CCAACACCGTGGTGCGCGCCTACCGGGAATTGGAAATCCGCGGCGTGCTGGAGACCCAGCAAGGGACGGGGACGTTCATC
AGTCATAAAAAGATCAGGCAGGACGAAGTGGAGCGGCGGCGCCAGCTCGGGCAGCTCGTGACGGAGTTTGTCTCGCGGGC
CGGGGCTTCGGGCTTTAAGGTTGACGAACTTATGGAGGAACTGAATGAGCGTTCCATCGATGCTGGGAAAAAGAGGAGAT
AA

Upstream 100 bases:

>100_bases
GCGTGTACTATAGCGGGCTGACCCGGCACCTTGCAAGCCTTCCTCGAAGAGTACTTTTCGCTTGACAATGTATTAGTAGT
CTAGTACACTATCATTCTAG

Downstream 100 bases:

>100_bases
GGCAATGAAACCGGATCTTTCGGCACTACGCGTGAGCCAGGTTGGTGTCGCGCTCTTTGTGATCTCGATGATCGCGGGGC
TGGGACTTTCGGCGGCGCTG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRVTFQLRLDLQSGVPVYRQIIDQVLGGVAAGTLEPGDQLPTVRQVAVDLSINPNTVVRAYRELEIRGVLETQQGTGTFI
SHKKIRQDEVERRRQLGQLVTEFVSRAGASGFKVDELMEELNERSIDAGKKRR

Sequences:

>Translated_133_residues
MRVTFQLRLDLQSGVPVYRQIIDQVLGGVAAGTLEPGDQLPTVRQVAVDLSINPNTVVRAYRELEIRGVLETQQGTGTFI
SHKKIRQDEVERRRQLGQLVTEFVSRAGASGFKVDELMEELNERSIDAGKKRR
>Mature_133_residues
MRVTFQLRLDLQSGVPVYRQIIDQVLGGVAAGTLEPGDQLPTVRQVAVDLSINPNTVVRAYRELEIRGVLETQQGTGTFI
SHKKIRQDEVERRRQLGQLVTEFVSRAGASGFKVDELMEELNERSIDAGKKRR

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14946; Mature: 14946

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTFQLRLDLQSGVPVYRQIIDQVLGGVAAGTLEPGDQLPTVRQVAVDLSINPNTVVRA
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCCCCHHHHHH
YRELEIRGVLETQQGTGTFISHKKIRQDEVERRRQLGQLVTEFVSRAGASGFKVDELMEE
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LNERSIDAGKKRR
HHHHCCCCCCCCC
>Mature Secondary Structure
MRVTFQLRLDLQSGVPVYRQIIDQVLGGVAAGTLEPGDQLPTVRQVAVDLSINPNTVVRA
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEECCCCCHHHHHH
YRELEIRGVLETQQGTGTFISHKKIRQDEVERRRQLGQLVTEFVSRAGASGFKVDELMEE
HHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LNERSIDAGKKRR
HHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]