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The map label for this gene is ygaD [C]

Identifier: 116620687

GI number: 116620687

Start: 1923041

End: 1924291

Strand: Reverse

Name: ygaD [C]

Synonym: Acid_1567

Alternate gene names: 116620687

Gene position: 1924291-1923041 (Counterclockwise)

Preceding gene: 116620688

Following gene: 116620682

Centisome position: 19.31

GC content: 62.83

Gene sequence:

>1251_bases
ATGGACGCGGAAATCATCGCCATCGGCAGCGAGATGCTGACACCGGAGCGTCTCGATACTAATTCACTCTACCTCACCGC
GGAATTGAACAAACTCGGCGTCGAAGTGGTCAGCAAGTGCGTGATCGGCGACGACCGCAACCGGCTTGCGGAGCAGGTTC
GCCACTCCATCGCGCGTTCGGCGATCGTCATCATCACGGGCGGGTTGGGACCAACGGAAGACGATGTGACCCGCGAGGCG
GTGGCGATGGCGCTGGATCGTAAGCTGACCTTGAACAGCGAGGTGCTCTCCTGGCTGGAGCAGCGCTTCGCCGCGGCCAA
GCGGCACATGGCGGAGGTCAACAAGCGCCAGGCCTTCGTGATCGAAGGGGCCGGCATTCTGCCCAACGATCGCGGCACCG
CGCCCGGCCAGTGGCTGGAGGAATCGGGCGCCTTTGCCATGTTGCTGCCGGGTCCGCCGCATGAGCTCAAGGCGATGTTC
GAACGCCAGTGCCTGCCGCGGCTGGCGCGCGTGGTACCCAAGCAGGTGATTCGCACGCTCTTCATGCGCGTCGCCGGAAT
GGGTGAAAGCGACCTGGATCAACTGATCGCGCCGGTCTACAAGAAGTACGAAAATCCGGCAACCACGATCCTGGCCGCGG
CCGGCGATATCCAGATCCACCTGCGCGCGCGCTGCCGCACGGAGTCCGAAGGCGACGCGCTACTGGCCGAGGTCGCCGGA
CCGATCGAATTGCTGCTGGGCGATCGCATCTATTCGCGCAATGGCGACTCGCTGGAGGTGGTAGTGGGCGGTCTACTCCG
TAAACTGCACGCCACGGTCTGCGTCGCCGAAAGCGCTACGGGTGGCATGTTGGGGGAACGGCTGACTACGGTACCCGGAA
GTTCGGAGTATTTTACGGGCGGCTTCATCACCTACAACAACCAAATGAAGATGGAGTTACTCGGAGTCAGCCCGGAAATT
CTGCAGGAGCACGGCGCGGTGAGCAAAGAAACCGCCGAAGCCATGGCGATTGGGGCGCGCAGGCGCACCAGTTCCACTTA
CGCGCTTTCCATCACGGGAGCCGCGGGTCCCGATTCGGCTGATGAGAGAGTTCCGGTCGGCACGATGTATACGGCAATTG
CAGATGCCGCGGGAACGCTCGTGGTGCACCGCCAGTTTCTCGGGGACCGGCAGCGTATACGGACGTTTGTTACGCAGATG
GCTTTGGACCTGCTGCGCCGACGGATCACGGGGAAGACTCAGACCGCCTGA

Upstream 100 bases:

>100_bases
TCGTGGGCGTTGCCTTCACTCCTTCACGCGCCATGGTGGTCACGACCACGAATGCGATCTACCGGGCCGACATTGGAATC
AAGGGGCGACCGCTCTTCTA

Downstream 100 bases:

>100_bases
AGAGTGGGTGAGCGGTTCTACCGCGTCAGGACGCGATCCGCCGCCATGTAGCCGATAGTCGTCGCCACGACCAGGAGCGC
TCCCAGGAGCTTGGGAGGGC

Product: competence/damage-inducible protein CinA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MDAEIIAIGSEMLTPERLDTNSLYLTAELNKLGVEVVSKCVIGDDRNRLAEQVRHSIARSAIVIITGGLGPTEDDVTREA
VAMALDRKLTLNSEVLSWLEQRFAAAKRHMAEVNKRQAFVIEGAGILPNDRGTAPGQWLEESGAFAMLLPGPPHELKAMF
ERQCLPRLARVVPKQVIRTLFMRVAGMGESDLDQLIAPVYKKYENPATTILAAAGDIQIHLRARCRTESEGDALLAEVAG
PIELLLGDRIYSRNGDSLEVVVGGLLRKLHATVCVAESATGGMLGERLTTVPGSSEYFTGGFITYNNQMKMELLGVSPEI
LQEHGAVSKETAEAMAIGARRRTSSTYALSITGAAGPDSADERVPVGTMYTAIADAAGTLVVHRQFLGDRQRIRTFVTQM
ALDLLRRRITGKTQTA

Sequences:

>Translated_416_residues
MDAEIIAIGSEMLTPERLDTNSLYLTAELNKLGVEVVSKCVIGDDRNRLAEQVRHSIARSAIVIITGGLGPTEDDVTREA
VAMALDRKLTLNSEVLSWLEQRFAAAKRHMAEVNKRQAFVIEGAGILPNDRGTAPGQWLEESGAFAMLLPGPPHELKAMF
ERQCLPRLARVVPKQVIRTLFMRVAGMGESDLDQLIAPVYKKYENPATTILAAAGDIQIHLRARCRTESEGDALLAEVAG
PIELLLGDRIYSRNGDSLEVVVGGLLRKLHATVCVAESATGGMLGERLTTVPGSSEYFTGGFITYNNQMKMELLGVSPEI
LQEHGAVSKETAEAMAIGARRRTSSTYALSITGAAGPDSADERVPVGTMYTAIADAAGTLVVHRQFLGDRQRIRTFVTQM
ALDLLRRRITGKTQTA
>Mature_416_residues
MDAEIIAIGSEMLTPERLDTNSLYLTAELNKLGVEVVSKCVIGDDRNRLAEQVRHSIARSAIVIITGGLGPTEDDVTREA
VAMALDRKLTLNSEVLSWLEQRFAAAKRHMAEVNKRQAFVIEGAGILPNDRGTAPGQWLEESGAFAMLLPGPPHELKAMF
ERQCLPRLARVVPKQVIRTLFMRVAGMGESDLDQLIAPVYKKYENPATTILAAAGDIQIHLRARCRTESEGDALLAEVAG
PIELLLGDRIYSRNGDSLEVVVGGLLRKLHATVCVAESATGGMLGERLTTVPGSSEYFTGGFITYNNQMKMELLGVSPEI
LQEHGAVSKETAEAMAIGARRRTSSTYALSITGAAGPDSADERVPVGTMYTAIADAAGTLVVHRQFLGDRQRIRTFVTQM
ALDLLRRRITGKTQTA

Specific function: Unknown

COG id: COG1058

COG function: function code R; Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family

Homologues:

Organism=Escherichia coli, GI1789052, Length=149, Percent_Identity=43.6241610738255, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788583, Length=195, Percent_Identity=31.7948717948718, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1787818, Length=143, Percent_Identity=33.5664335664336, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CINAL_SOLUE (Q028J4)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_822843.1
- ProteinModelPortal:   Q028J4
- SMR:   Q028J4
- STRING:   Q028J4
- GeneID:   4430265
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_1567
- NMPDR:   fig|234267.9.peg.1497
- eggNOG:   COG1058
- HOGENOM:   HBG449871
- OMA:   NPTVAPY
- PhylomeDB:   Q028J4
- ProtClustDB:   CLSK774700
- HAMAP:   MF_00226_B
- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR001453
- Gene3D:   G3DSA:3.40.980.10
- PIRSF:   PIRSF006728
- SMART:   SM00852
- TIGRFAMs:   TIGR00199
- TIGRFAMs:   TIGR00200

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth; SSF53218 MoCF_biosynth

EC number: NA

Molecular weight: Translated: 45124; Mature: 45124

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAEIIAIGSEMLTPERLDTNSLYLTAELNKLGVEVVSKCVIGDDRNRLAEQVRHSIARS
CCCEEEEECCHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
AIVIITGGLGPTEDDVTREAVAMALDRKLTLNSEVLSWLEQRFAAAKRHMAEVNKRQAFV
EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IEGAGILPNDRGTAPGQWLEESGAFAMLLPGPPHELKAMFERQCLPRLARVVPKQVIRTL
EECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMRVAGMGESDLDQLIAPVYKKYENPATTILAAAGDIQIHLRARCRTESEGDALLAEVAG
HHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCEEEEEEEECCCCCCCCCHHHHHCC
PIELLLGDRIYSRNGDSLEVVVGGLLRKLHATVCVAESATGGMLGERLTTVPGSSEYFTG
CHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCCEECC
GFITYNNQMKMELLGVSPEILQEHGAVSKETAEAMAIGARRRTSSTYALSITGAAGPDSA
CEEEECCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
DERVPVGTMYTAIADAAGTLVVHRQFLGDRQRIRTFVTQMALDLLRRRITGKTQTA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDAEIIAIGSEMLTPERLDTNSLYLTAELNKLGVEVVSKCVIGDDRNRLAEQVRHSIARS
CCCEEEEECCHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
AIVIITGGLGPTEDDVTREAVAMALDRKLTLNSEVLSWLEQRFAAAKRHMAEVNKRQAFV
EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
IEGAGILPNDRGTAPGQWLEESGAFAMLLPGPPHELKAMFERQCLPRLARVVPKQVIRTL
EECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FMRVAGMGESDLDQLIAPVYKKYENPATTILAAAGDIQIHLRARCRTESEGDALLAEVAG
HHHHHCCCHHHHHHHHHHHHHHHCCCHHEEEEECCCEEEEEEEECCCCCCCCCHHHHHCC
PIELLLGDRIYSRNGDSLEVVVGGLLRKLHATVCVAESATGGMLGERLTTVPGSSEYFTG
CHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCCCCCEECC
GFITYNNQMKMELLGVSPEILQEHGAVSKETAEAMAIGARRRTSSTYALSITGAAGPDSA
CEEEECCCEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
DERVPVGTMYTAIADAAGTLVVHRQFLGDRQRIRTFVTQMALDLLRRRITGKTQTA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA