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The map label for this gene is ypdA [H]

Identifier: 116620583

GI number: 116620583

Start: 1792738

End: 1793859

Strand: Reverse

Name: ypdA [H]

Synonym: Acid_1462

Alternate gene names: 116620583

Gene position: 1793859-1792738 (Counterclockwise)

Preceding gene: 116620584

Following gene: 116620582

Centisome position: 18.0

GC content: 59.98

Gene sequence:

>1122_bases
GTGGACCTAGATAACCCTGGTGGAAAAATTCGACCGGTGCTCTTCGGCTTTCTTGGCTGGAGCGCGATCGGACTGGTTTT
TTCGATTCCAGGCATCCGGACCAGCGATCGCTGGGTGACTCCCCTGCTGCTCTCGTTTGTTCAATGGTGGTCCTGGGGAC
TGATCGCGCTGCTGATTGCGCAGTTCGATGGGCGGCTACCGTTCACGGATGCGCAGGTCGGGCGACGGCTGCTGGCTCAC
ATTCCCGGAAGCCTGGTACTGACGTCGGTGTACCTGTACGTGCAGGCAGGGCTGAGGGCGTTGTTTGGTGTTGGGCCGAT
GCAGGCGGTGGTTGATCCCGGCGTGCTGTTGCAATCGGTGGATAGCGGCATGTTTTTGTGGGTGTGGATGATCTACTGGA
TGATCCTGGGAGGGTGGCTCGCAAAGCAGTATCAGGAGCGGCTGCGGCGGAGCGAGCTACAGCGGGAGCGGACGGAACGA
TTGTCCACACAAGCGCAGCTGCGATCCCTGCGATTGCAGATTGACCCGCACTTCCTTTTCAATGCCCTGAATGCGATCTC
GTCGGAAGTAGAAGCCGACCCAGTGAGCGCCCGCAATATGATCGAGCATCTCGGAAACCTGCTTCGCCTGACGCTGGATA
CGAACGATCGTCAGCTGGTTCCGCTGTTCGAGGAGCTTTCGTTTCTGGATCACTATCTGGCGATTCAGAGAATTCGCTTT
GGCGACAGGCTGCGTTTCGAACAGGTGATCGACGAAGACGTGCGACATGTTCTGGTGCCTTCGATGACGATCCAGCCGCT
GGTGGAGAATTCGATTCGCCATGGCTTGTCGCAGAGGGCCAAGGGCGGACTGGTGCGCGTGGCGGCCAGGCGCTGCGATG
AGCAACACATTCGGATTACGGTGGAAGATGACGGTGTCGGGCTGCCCGCGGATTGGAGCCCCGGCAAGTCGCTGGGACTT
GGTCTTTCGATTACAGCGCAGCGGCTGGCCGCGCTTTATCCGCGGCAGGATAGTGTGTTCGATGTACGGAGGCGCGCGGG
AGGCGGAACCGAGGTGGAAATGCGGCTGCCGATCCACCCGGGAGAAGGAACTGCCTGGAAGGCGGAGCCGAGACATGCCT
GA

Upstream 100 bases:

>100_bases
CTCGCGAACAATTACTTCGGATGGGGGCTGATGCTGCGTCTGGCTGATACGGAGGGGGCTCACCTCGCGGCAGCCATGAC
GGTGGAGGAGACGGGGCAAG

Downstream 100 bases:

>100_bases
GCGACCGGTGGGCGTTCTGGTTGCGGATGACGAGAAGCCGGCGCGGAGGCGGTTGCTGGATCTGCTGCGGCAAGAGCCGG
GAATCGCGTCCGTGTGGGAG

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDLDNPGGKIRPVLFGFLGWSAIGLVFSIPGIRTSDRWVTPLLLSFVQWWSWGLIALLIAQFDGRLPFTDAQVGRRLLAH
IPGSLVLTSVYLYVQAGLRALFGVGPMQAVVDPGVLLQSVDSGMFLWVWMIYWMILGGWLAKQYQERLRRSELQRERTER
LSTQAQLRSLRLQIDPHFLFNALNAISSEVEADPVSARNMIEHLGNLLRLTLDTNDRQLVPLFEELSFLDHYLAIQRIRF
GDRLRFEQVIDEDVRHVLVPSMTIQPLVENSIRHGLSQRAKGGLVRVAARRCDEQHIRITVEDDGVGLPADWSPGKSLGL
GLSITAQRLAALYPRQDSVFDVRRRAGGGTEVEMRLPIHPGEGTAWKAEPRHA

Sequences:

>Translated_373_residues
MDLDNPGGKIRPVLFGFLGWSAIGLVFSIPGIRTSDRWVTPLLLSFVQWWSWGLIALLIAQFDGRLPFTDAQVGRRLLAH
IPGSLVLTSVYLYVQAGLRALFGVGPMQAVVDPGVLLQSVDSGMFLWVWMIYWMILGGWLAKQYQERLRRSELQRERTER
LSTQAQLRSLRLQIDPHFLFNALNAISSEVEADPVSARNMIEHLGNLLRLTLDTNDRQLVPLFEELSFLDHYLAIQRIRF
GDRLRFEQVIDEDVRHVLVPSMTIQPLVENSIRHGLSQRAKGGLVRVAARRCDEQHIRITVEDDGVGLPADWSPGKSLGL
GLSITAQRLAALYPRQDSVFDVRRRAGGGTEVEMRLPIHPGEGTAWKAEPRHA
>Mature_373_residues
MDLDNPGGKIRPVLFGFLGWSAIGLVFSIPGIRTSDRWVTPLLLSFVQWWSWGLIALLIAQFDGRLPFTDAQVGRRLLAH
IPGSLVLTSVYLYVQAGLRALFGVGPMQAVVDPGVLLQSVDSGMFLWVWMIYWMILGGWLAKQYQERLRRSELQRERTER
LSTQAQLRSLRLQIDPHFLFNALNAISSEVEADPVSARNMIEHLGNLLRLTLDTNDRQLVPLFEELSFLDHYLAIQRIRF
GDRLRFEQVIDEDVRHVLVPSMTIQPLVENSIRHGLSQRAKGGLVRVAARRCDEQHIRITVEDDGVGLPADWSPGKSLGL
GLSITAQRLAALYPRQDSVFDVRRRAGGGTEVEMRLPIHPGEGTAWKAEPRHA

Specific function: Unknown

COG id: COG2972

COG function: function code T; Predicted signal transduction protein with a C-terminal ATPase domain

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=218, Percent_Identity=36.697247706422, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788446, Length=205, Percent_Identity=33.1707317073171, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 42091; Mature: 42091

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDNPGGKIRPVLFGFLGWSAIGLVFSIPGIRTSDRWVTPLLLSFVQWWSWGLIALLIA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QFDGRLPFTDAQVGRRLLAHIPGSLVLTSVYLYVQAGLRALFGVGPMQAVVDPGVLLQSV
HHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
DSGMFLWVWMIYWMILGGWLAKQYQERLRRSELQRERTERLSTQAQLRSLRLQIDPHFLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
NALNAISSEVEADPVSARNMIEHLGNLLRLTLDTNDRQLVPLFEELSFLDHYLAIQRIRF
HHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHC
GDRLRFEQVIDEDVRHVLVPSMTIQPLVENSIRHGLSQRAKGGLVRVAARRCDEQHIRIT
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEE
VEDDGVGLPADWSPGKSLGLGLSITAQRLAALYPRQDSVFDVRRRAGGGTEVEMRLPIHP
ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECEEC
GEGTAWKAEPRHA
CCCCCCCCCCCCC
>Mature Secondary Structure
MDLDNPGGKIRPVLFGFLGWSAIGLVFSIPGIRTSDRWVTPLLLSFVQWWSWGLIALLIA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QFDGRLPFTDAQVGRRLLAHIPGSLVLTSVYLYVQAGLRALFGVGPMQAVVDPGVLLQSV
HHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
DSGMFLWVWMIYWMILGGWLAKQYQERLRRSELQRERTERLSTQAQLRSLRLQIDPHFLF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
NALNAISSEVEADPVSARNMIEHLGNLLRLTLDTNDRQLVPLFEELSFLDHYLAIQRIRF
HHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHC
GDRLRFEQVIDEDVRHVLVPSMTIQPLVENSIRHGLSQRAKGGLVRVAARRCDEQHIRIT
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEE
VEDDGVGLPADWSPGKSLGLGLSITAQRLAALYPRQDSVFDVRRRAGGGTEVEMRLPIHP
ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEECEEC
GEGTAWKAEPRHA
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]