Click here to switch to the map view.

The map label for this gene is infC

Identifier: 116620544

GI number: 116620544

Start: 1750066

End: 1750707

Strand: Direct

Name: infC

Synonym: Acid_1422

Alternate gene names: 116620544

Gene position: 1750066-1750707 (Clockwise)

Preceding gene: 116620542

Following gene: 116620545

Centisome position: 17.56

GC content: 58.1

Gene sequence:

>642_bases
ATGTATCCAGGCAGAAATTTTCCTCCTCGCAGGCAGAATCGTAGAGAGAACGTGAATGAGTCGATTCGCGTTCGAGAAGT
GCGTGCGGTATTCCCCGATGGCACCACTGAGGTGATGCCGACTGCTGCTGCCCTACGCAAGGCGCAGGAACTGGGGCTCG
ACCTCGTGCTGATCGCTCCCACTGCCGTGCCTCCCGTCGCCAAAGCGGTGGATTTCGGACACTACCAGTACGACCTCAAG
AAGAAGCAGCACGATGCGCGGAAAAAGCAGCATGTCGTGCAGGTCAAGGAACTGAAGTTCCGCCCCAATACCGACGATCA
CGACTACGATTTCAAAAAGAAGCATGCCATCCGGTTCCTTCAGGAAGGCAATCGCGTTAAGGCAGTCGTACAGTTCCGCG
GCCGCGAAATCGCGCACGCCGATCTCGGCAAGAAGCTCCTCATGCGCTTTGCCGCGGACCTTACCGCTTACGGCACTGTC
GAGGGCATGCCCCGCCTCGAAGGCCGGAACGCCCACGTTTTGATCAGCCCCGTGAAGACTCTGATCAAAAGCGAGAAGCC
CGAGAAACCGGAAAAACCCGAGAAGTCCGAAAAGACGGAAAAGCAAGGCCCATCCACGCCGCCCGCTCCGTCCGCGTCTT
GA

Upstream 100 bases:

>100_bases
GTCCTTGCTTTCAGCCAATTCGATTCTCGTCCAGAAACCCTCCTGGGGCGCCCGGCCTCAATTTGCTTGTCCCGGCAACT
TCCGAAAAAATCAATAACAA

Downstream 100 bases:

>100_bases
TTTAGCGGGTCTCCTACAGTACTGAAGCCTGCCGGTACGGTTTGGCCCGGTTCTGTGCGCGTGATAAACTGCGAGGAGTT
TCTGACGTTTAGCCGGCGTA

Product: translation initiation factor 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MYPGRNFPPRRQNRRENVNESIRVREVRAVFPDGTTEVMPTAAALRKAQELGLDLVLIAPTAVPPVAKAVDFGHYQYDLK
KKQHDARKKQHVVQVKELKFRPNTDDHDYDFKKKHAIRFLQEGNRVKAVVQFRGREIAHADLGKKLLMRFAADLTAYGTV
EGMPRLEGRNAHVLISPVKTLIKSEKPEKPEKPEKSEKTEKQGPSTPPAPSAS

Sequences:

>Translated_213_residues
MYPGRNFPPRRQNRRENVNESIRVREVRAVFPDGTTEVMPTAAALRKAQELGLDLVLIAPTAVPPVAKAVDFGHYQYDLK
KKQHDARKKQHVVQVKELKFRPNTDDHDYDFKKKHAIRFLQEGNRVKAVVQFRGREIAHADLGKKLLMRFAADLTAYGTV
EGMPRLEGRNAHVLISPVKTLIKSEKPEKPEKPEKSEKTEKQGPSTPPAPSAS
>Mature_213_residues
MYPGRNFPPRRQNRRENVNESIRVREVRAVFPDGTTEVMPTAAALRKAQELGLDLVLIAPTAVPPVAKAVDFGHYQYDLK
KKQHDARKKQHVVQVKELKFRPNTDDHDYDFKKKHAIRFLQEGNRVKAVVQFRGREIAHADLGKKLLMRFAADLTAYGTV
EGMPRLEGRNAHVLISPVKTLIKSEKPEKPEKPEKSEKTEKQGPSTPPAPSAS

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family

Homologues:

Organism=Escherichia coli, GI1788012, Length=181, Percent_Identity=41.4364640883978, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IF3_SOLUE (Q02D92)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_822700.1
- ProteinModelPortal:   Q02D92
- STRING:   Q02D92
- GeneID:   4430397
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_1422
- NMPDR:   fig|234267.9.peg.1353
- eggNOG:   COG0290
- HOGENOM:   HBG744268
- OMA:   FDRRAPV
- GO:   GO:0005737
- HAMAP:   MF_00080
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814
- Gene3D:   G3DSA:3.10.20.80
- Gene3D:   G3DSA:3.30.110.10
- PANTHER:   PTHR10938
- TIGRFAMs:   TIGR00168

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N; SSF54364 IF3; SSF55200 IF3

EC number: NA

Molecular weight: Translated: 24118; Mature: 24118

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYPGRNFPPRRQNRRENVNESIRVREVRAVFPDGTTEVMPTAAALRKAQELGLDLVLIAP
CCCCCCCCCCHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
TAVPPVAKAVDFGHYQYDLKKKQHDARKKQHVVQVKELKFRPNTDDHDYDFKKKHAIRFL
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
QEGNRVKAVVQFRGREIAHADLGKKLLMRFAADLTAYGTVEGMPRLEGRNAHVLISPVKT
HCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHH
LIKSEKPEKPEKPEKSEKTEKQGPSTPPAPSAS
HHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MYPGRNFPPRRQNRRENVNESIRVREVRAVFPDGTTEVMPTAAALRKAQELGLDLVLIAP
CCCCCCCCCCHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
TAVPPVAKAVDFGHYQYDLKKKQHDARKKQHVVQVKELKFRPNTDDHDYDFKKKHAIRFL
CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
QEGNRVKAVVQFRGREIAHADLGKKLLMRFAADLTAYGTVEGMPRLEGRNAHVLISPVKT
HCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHH
LIKSEKPEKPEKPEKSEKTEKQGPSTPPAPSAS
HHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA