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The map label for this gene is ygjR [C]

Identifier: 116620465

GI number: 116620465

Start: 1653363

End: 1654385

Strand: Direct

Name: ygjR [C]

Synonym: Acid_1343

Alternate gene names: 116620465

Gene position: 1653363-1654385 (Clockwise)

Preceding gene: 116620462

Following gene: 116620466

Centisome position: 16.59

GC content: 63.34

Gene sequence:

>1023_bases
ATGCGGTTCATGAAGAAAGTGCGATGGGGAGTTTTGGGCGTGGCGCGGATCGCCGTTAACCGCGTGATCCCGGCGATGCA
GGCCGGCGAGTGGTCGGAGATTACGGCGATCGCGTCGCGCGACCGGGGCCGGGCGGCATCGGCGGCGAGCGAGCTGAAGA
TTCCCAAGGCGTACGGTTCCTACGAGGAACTGATCGCGGACCCGGAGATCGACGCGATTTACAATCCGCTGCCGAATCAC
CTGCACGTGCCGTGGTCGGTGCGCGCGGCGGAGGCCGGGAAGCACGTGCTGTGCGAAAAGCCGGTCGGGTTGAACGTGGC
GGAGGCGCTGCGGCTGGTGGAAGTCCGCGACCGCACGGGGGTGACGATGGGCGAAGCGTTCATGGTGCAATCGCATCCGC
AGTGGGTGCGGATTCAGGAACTGGTGCGCGGCGGGCGGATCGGGGAACTGCGGTCGGCGATCGGGTCGTTCAGCTATTTC
AAGCTGGAGGCGGAGAATATCCGCAACATCCGGGAGTATGGCGGCGGCGGGTTGATGGACATCGGATGCTATCCGATCAA
GACGTCGCGGATGGTGTTCGGGGATGAGCCGGTGCGGGTGTCAGCCGCGGTGAAGCGCGATCCGCAATTCGGGAACATCG
ATATGCTGACTTCGGCGATTCTGGAATTCCCGTCGGGGCACTGCGTGTTCACGTGCAGCACGCAGATCATGCAGCAGCAG
AGCATGTGTTTCTACGGGACTACGGGGAGAATTCAGCCGGAGATTCCGTTTAATGCCACGCCAGGCGGAACGTCGAGGAT
CTTCATCGATGACGGGCGCGATTTAACGGGCGGAGGGCGGGTGGTGGAGGAGTTCCCGGCATGCGACCAGTACACGATTC
AAGGCGATCTGTTTTCGCGGGCGATCCGGGAGGGTGGGACTCCGCCGGTGCCGCTGGAGGACGCGGTGCGCAATATGGCT
GTGATCGACGCAGTGTTCCGCGCGGGTGAGACGGGGAAATGGGAAACGGTGAAGGTGGATTGA

Upstream 100 bases:

>100_bases
TCGCCAGAAAACGAGACATGAAACCTCACTATAGCGCGGAGCAGGTGGATCCCGGATACGGTATGGGCGTTAGGGAAGCG
CGGCGGGGCGGCAGGGTACA

Downstream 100 bases:

>100_bases
GGGGTGCGCGCGGTTGGATAGGGTGCCGAGCGTGAGCGGAGAACCCGCCTGAAAGGCGGCTGCGGCCAGGATTGGCCGCC
CCACAAGACGGCAAGCCGCC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MRFMKKVRWGVLGVARIAVNRVIPAMQAGEWSEITAIASRDRGRAASAASELKIPKAYGSYEELIADPEIDAIYNPLPNH
LHVPWSVRAAEAGKHVLCEKPVGLNVAEALRLVEVRDRTGVTMGEAFMVQSHPQWVRIQELVRGGRIGELRSAIGSFSYF
KLEAENIRNIREYGGGGLMDIGCYPIKTSRMVFGDEPVRVSAAVKRDPQFGNIDMLTSAILEFPSGHCVFTCSTQIMQQQ
SMCFYGTTGRIQPEIPFNATPGGTSRIFIDDGRDLTGGGRVVEEFPACDQYTIQGDLFSRAIREGGTPPVPLEDAVRNMA
VIDAVFRAGETGKWETVKVD

Sequences:

>Translated_340_residues
MRFMKKVRWGVLGVARIAVNRVIPAMQAGEWSEITAIASRDRGRAASAASELKIPKAYGSYEELIADPEIDAIYNPLPNH
LHVPWSVRAAEAGKHVLCEKPVGLNVAEALRLVEVRDRTGVTMGEAFMVQSHPQWVRIQELVRGGRIGELRSAIGSFSYF
KLEAENIRNIREYGGGGLMDIGCYPIKTSRMVFGDEPVRVSAAVKRDPQFGNIDMLTSAILEFPSGHCVFTCSTQIMQQQ
SMCFYGTTGRIQPEIPFNATPGGTSRIFIDDGRDLTGGGRVVEEFPACDQYTIQGDLFSRAIREGGTPPVPLEDAVRNMA
VIDAVFRAGETGKWETVKVD
>Mature_340_residues
MRFMKKVRWGVLGVARIAVNRVIPAMQAGEWSEITAIASRDRGRAASAASELKIPKAYGSYEELIADPEIDAIYNPLPNH
LHVPWSVRAAEAGKHVLCEKPVGLNVAEALRLVEVRDRTGVTMGEAFMVQSHPQWVRIQELVRGGRIGELRSAIGSFSYF
KLEAENIRNIREYGGGGLMDIGCYPIKTSRMVFGDEPVRVSAAVKRDPQFGNIDMLTSAILEFPSGHCVFTCSTQIMQQQ
SMCFYGTTGRIQPEIPFNATPGGTSRIFIDDGRDLTGGGRVVEEFPACDQYTIQGDLFSRAIREGGTPPVPLEDAVRNMA
VIDAVFRAGETGKWETVKVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=254, Percent_Identity=33.0708661417323, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI145693182, Length=205, Percent_Identity=27.3170731707317, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87082405, Length=226, Percent_Identity=25.2212389380531, Blast_Score=71, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24581117, Length=249, Percent_Identity=27.3092369477912, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24581115, Length=201, Percent_Identity=27.8606965174129, Blast_Score=84, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37394; Mature: 37394

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFMKKVRWGVLGVARIAVNRVIPAMQAGEWSEITAIASRDRGRAASAASELKIPKAYGS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHCCC
YEELIADPEIDAIYNPLPNHLHVPWSVRAAEAGKHVLCEKPVGLNVAEALRLVEVRDRTG
HHHHHCCCCHHHHHCCCCCCEECCEEEEHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
VTMGEAFMVQSHPQWVRIQELVRGGRIGELRSAIGSFSYFKLEAENIRNIREYGGGGLMD
CEECCEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCEEE
IGCYPIKTSRMVFGDEPVRVSAAVKRDPQFGNIDMLTSAILEFPSGHCVFTCSTQIMQQQ
ECEEEEECCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHC
SMCFYGTTGRIQPEIPFNATPGGTSRIFIDDGRDLTGGGRVVEEFPACDQYTIQGDLFSR
CCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEECHHHHHH
AIREGGTPPVPLEDAVRNMAVIDAVFRAGETGKWETVKVD
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
>Mature Secondary Structure
MRFMKKVRWGVLGVARIAVNRVIPAMQAGEWSEITAIASRDRGRAASAASELKIPKAYGS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHCCC
YEELIADPEIDAIYNPLPNHLHVPWSVRAAEAGKHVLCEKPVGLNVAEALRLVEVRDRTG
HHHHHCCCCHHHHHCCCCCCEECCEEEEHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC
VTMGEAFMVQSHPQWVRIQELVRGGRIGELRSAIGSFSYFKLEAENIRNIREYGGGGLMD
CEECCEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCEEE
IGCYPIKTSRMVFGDEPVRVSAAVKRDPQFGNIDMLTSAILEFPSGHCVFTCSTQIMQQQ
ECEEEEECCEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECHHHHHHC
SMCFYGTTGRIQPEIPFNATPGGTSRIFIDDGRDLTGGGRVVEEFPACDQYTIQGDLFSR
CCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCEEECHHHHHH
AIREGGTPPVPLEDAVRNMAVIDAVFRAGETGKWETVKVD
HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]