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The map label for this gene is secF [H]

Identifier: 116620402

GI number: 116620402

Start: 1577664

End: 1578896

Strand: Direct

Name: secF [H]

Synonym: Acid_1279

Alternate gene names: 116620402

Gene position: 1577664-1578896 (Clockwise)

Preceding gene: 116620401

Following gene: 116620403

Centisome position: 15.83

GC content: 55.31

Gene sequence:

>1233_bases
ATGGAATTATTTAAGAACACGAATTTTGATTTTCTAGGCAAGAAGTGGCCCTTCATTATTGCCTCGCTGGTGCTCACCGC
CGCTGGAGCCGCAAGCGTCCTCATGCAGGGCGGGCTGAAGTTCGGCATCGATTTCAAAGGCGGCGCCCTCATGACGGTGA
AGTTCGCGGACACACCTCCGCTGGACAAGATCCGTTCCGCATTCGCCAAGTCGGGAAAGGTCAAGGGCGAAGTCAGCGTC
CAGAGCTTCACGGATCCTTCGGCGAAGAACGAAGTGGAGATTGGGACCGAATTGGCCGATGAGAGATTATTGGCGGCGAA
CCGTCAGGCGATGGAAGAAGTGCTGGCTGCAGCTTTCGGTCAACCCTCGAGTGGCAAGCTGGATTTCAACGGTGCCAGTC
AGCAGCAGTTGATCGACCGGTTGCGCGAGCCATTGGCCCGCGCGGGTGTGCCGATGAGCGATCCGCAATTGCAGAAACTG
GTCGCGGATATGATGAACTTCCGCGATACACCCCCGCGCTCGGGAATGATCACGGATTTTAACCAATTGGCTTCTGTGCC
CGGCGTAAATACTGCTATTATTAACACTCTCAAACAGGAGAGTTATTTGGCGCCTTACAAGGTGATCCAAACCCAAATGG
TGGGGCCCAAGGTCGGCGTTGAGCTGCGGACCAAGGCAGTCCTGGCCACGTTGTACGCCCTTGCCGGTATGCTGGTGTAC
ATCGCCTTCCGGTTCGAGTGGATTTATGGTTTGGGCGCGGTGATCGCAGTATTCCACGATACGTTGATCACCATCGGTTT
GTTCTCGATCTTCCACGAAGAGATCTCCATGACGGTCATCGCGGCCCTCCTTACCCTGGTGGGCTACTCGATGAACGATA
CAATCGTAATCTTCGATCGCATTCGGGAGAATTTGAAGATTATGAGGCGCGAACCTCTGGAATCGCTCATGAACAAGAGC
GTCAACCAGACGCTGAGCCGGACTATCATGACGTCCGGTCTCACCTTCCTCACCGTAATCGCCCTGTTCATCTGGGGCGG
GCCGGTGTTGCACGGGTTCTCGTTCGCGCTGGTGTGCGGCATCATTGTAGGTACATATTCATCGGTATTCATCGCCAGTC
CAATCGTTTTGTTCTGGCATAACTATACGGACAGTCGCAGGAAGACTGCTCCGGCGGCCAGTACGGCCCGACCGGAGACG
GTGCGCAAAAGCCCGGCGAGGGCAATCAAATAG

Upstream 100 bases:

>100_bases
GCATCTGAGGCCTGGGCAGCTGGTTTATCAGCAGCTCGGGAACAAAAAATAAAGGGCTGGTGTCCAACGTTATGGAAAAC
ACCAGCACGGCAAAGATTCG

Downstream 100 bases:

>100_bases
AAACGCCGCGGCGGGCACTTTCGTGCTCCCTGCGGAGTCAAAAGGAAAGGGAGCTTTGTATGTTCGAGCAAACATTCGTC
GAGGGTAAGACAAAATCGAC

Product: protein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MELFKNTNFDFLGKKWPFIIASLVLTAAGAASVLMQGGLKFGIDFKGGALMTVKFADTPPLDKIRSAFAKSGKVKGEVSV
QSFTDPSAKNEVEIGTELADERLLAANRQAMEEVLAAAFGQPSSGKLDFNGASQQQLIDRLREPLARAGVPMSDPQLQKL
VADMMNFRDTPPRSGMITDFNQLASVPGVNTAIINTLKQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVY
IAFRFEWIYGLGAVIAVFHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDRIRENLKIMRREPLESLMNKS
VNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCGIIVGTYSSVFIASPIVLFWHNYTDSRRKTAPAASTARPET
VRKSPARAIK

Sequences:

>Translated_410_residues
MELFKNTNFDFLGKKWPFIIASLVLTAAGAASVLMQGGLKFGIDFKGGALMTVKFADTPPLDKIRSAFAKSGKVKGEVSV
QSFTDPSAKNEVEIGTELADERLLAANRQAMEEVLAAAFGQPSSGKLDFNGASQQQLIDRLREPLARAGVPMSDPQLQKL
VADMMNFRDTPPRSGMITDFNQLASVPGVNTAIINTLKQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVY
IAFRFEWIYGLGAVIAVFHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDRIRENLKIMRREPLESLMNKS
VNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCGIIVGTYSSVFIASPIVLFWHNYTDSRRKTAPAASTARPET
VRKSPARAIK
>Mature_410_residues
MELFKNTNFDFLGKKWPFIIASLVLTAAGAASVLMQGGLKFGIDFKGGALMTVKFADTPPLDKIRSAFAKSGKVKGEVSV
QSFTDPSAKNEVEIGTELADERLLAANRQAMEEVLAAAFGQPSSGKLDFNGASQQQLIDRLREPLARAGVPMSDPQLQKL
VADMMNFRDTPPRSGMITDFNQLASVPGVNTAIINTLKQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVY
IAFRFEWIYGLGAVIAVFHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDRIRENLKIMRREPLESLMNKS
VNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCGIIVGTYSSVFIASPIVLFWHNYTDSRRKTAPAASTARPET
VRKSPARAIK

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=259, Percent_Identity=38.6100386100386, Blast_Score=179, Evalue=4e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 44843; Mature: 44843

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFKNTNFDFLGKKWPFIIASLVLTAAGAASVLMQGGLKFGIDFKGGALMTVKFADTPP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCC
LDKIRSAFAKSGKVKGEVSVQSFTDPSAKNEVEIGTELADERLLAANRQAMEEVLAAAFG
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QPSSGKLDFNGASQQQLIDRLREPLARAGVPMSDPQLQKLVADMMNFRDTPPRSGMITDF
CCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
NQLASVPGVNTAIINTLKQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVY
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAFRFEWIYGLGAVIAVFHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHH
IRENLKIMRREPLESLMNKSVNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
IIVGTYSSVFIASPIVLFWHNYTDSRRKTAPAASTARPETVRKSPARAIK
HHHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCHHHHCCCHHCCC
>Mature Secondary Structure
MELFKNTNFDFLGKKWPFIIASLVLTAAGAASVLMQGGLKFGIDFKGGALMTVKFADTPP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCCC
LDKIRSAFAKSGKVKGEVSVQSFTDPSAKNEVEIGTELADERLLAANRQAMEEVLAAAFG
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QPSSGKLDFNGASQQQLIDRLREPLARAGVPMSDPQLQKLVADMMNFRDTPPRSGMITDF
CCCCCEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCH
NQLASVPGVNTAIINTLKQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVY
HHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
IAFRFEWIYGLGAVIAVFHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHH
IRENLKIMRREPLESLMNKSVNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
IIVGTYSSVFIASPIVLFWHNYTDSRRKTAPAASTARPETVRKSPARAIK
HHHHHHHHHHHHCCHHEEEECCCCCHHHCCCCCCCCCCHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]