Click here to switch to the map view.

The map label for this gene is ypdB [H]

Identifier: 116620376

GI number: 116620376

Start: 1550641

End: 1551423

Strand: Reverse

Name: ypdB [H]

Synonym: Acid_1253

Alternate gene names: 116620376

Gene position: 1551423-1550641 (Counterclockwise)

Preceding gene: 116620381

Following gene: 116620372

Centisome position: 15.57

GC content: 57.73

Gene sequence:

>783_bases
ATGCGAGACCGCGCGACGGCAACCCTCACTACAGTTGTCGTAGACGACGAACAGCTGGCTTGTGACGAGCTTGCCTTCCT
GCTCAAAGATTTCCCGGAAATTGAAGTAATTGCAAGGGGTTCCAATGGTTTGGAGGCGGTGGACCTGATCCGGAAATTAG
AGCCGGAACTGGTTTTTCTGGATGTAAATATGCCTGGTCTGGACGGCCTCGGAGTGGTCCGGCGCCTGCGCGATCAGGAT
CTCGAGCTGCCCCACTTCATTTTCGTCACGGCCTACGACCAGTACGCCGTAGAGGCCTTTCGACTCGAGGCAATGGACTA
CCTGCTGAAGCCGGTGGAACGCGGCCGCCTCGCCGAAACGATCGAGCGCGCCCGGCGCGCGATCCAGGAAAAACGGGCTC
CCGAGTTTCCCGCTCCAGCCCCCAAAAGCCCATCCCAAGCCGCCACCCGCACCAAACTGCTAGTGCGTGCCAACAGCCGG
AACTTCATCGTGGACGCCAATGAAGTGATCTACGCCACCATCGACGATGGCCTGATCACACTGGTCACCACCAATCTGGA
AGGCCACTCGAACTACCGCACCATCGAGGATCTCCAGGCAAACCTGGATCGTGAGATGTTCTGGCGCGTGCATCGCTCCT
ACCTGGTAAACATTAACCGCATCAAGGAAGTCGTACCCTGGTTCAAATCCAGCTACCAGCTTCGCATGGACGATAAGAAA
CACACCGAGATCCCCGTTAGCCGCGTCCAAACTCGCCGCCTGCGGGAACTCTTCAAGCTGTAA

Upstream 100 bases:

>100_bases
ATCAAAACTCCCAGTTTCCCTTCGGCAGGCGCAATTTGGACGTTGTCCTTATTCGGCAAACGGTTCTCCTTTAAGACCAA
AATGCTATAATACCAACTCC

Downstream 100 bases:

>100_bases
CGAACTTCACCACTACCGACACCCGGCGATTCCGCGCGTCGAAGCGATCTCTTTCGTTGAACGGCTTCTGATCGGCGAAG
CCGCGCACTTCCACCACTTG

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MRDRATATLTTVVVDDEQLACDELAFLLKDFPEIEVIARGSNGLEAVDLIRKLEPELVFLDVNMPGLDGLGVVRRLRDQD
LELPHFIFVTAYDQYAVEAFRLEAMDYLLKPVERGRLAETIERARRAIQEKRAPEFPAPAPKSPSQAATRTKLLVRANSR
NFIVDANEVIYATIDDGLITLVTTNLEGHSNYRTIEDLQANLDREMFWRVHRSYLVNINRIKEVVPWFKSSYQLRMDDKK
HTEIPVSRVQTRRLRELFKL

Sequences:

>Translated_260_residues
MRDRATATLTTVVVDDEQLACDELAFLLKDFPEIEVIARGSNGLEAVDLIRKLEPELVFLDVNMPGLDGLGVVRRLRDQD
LELPHFIFVTAYDQYAVEAFRLEAMDYLLKPVERGRLAETIERARRAIQEKRAPEFPAPAPKSPSQAATRTKLLVRANSR
NFIVDANEVIYATIDDGLITLVTTNLEGHSNYRTIEDLQANLDREMFWRVHRSYLVNINRIKEVVPWFKSSYQLRMDDKK
HTEIPVSRVQTRRLRELFKL
>Mature_260_residues
MRDRATATLTTVVVDDEQLACDELAFLLKDFPEIEVIARGSNGLEAVDLIRKLEPELVFLDVNMPGLDGLGVVRRLRDQD
LELPHFIFVTAYDQYAVEAFRLEAMDYLLKPVERGRLAETIERARRAIQEKRAPEFPAPAPKSPSQAATRTKLLVRANSR
NFIVDANEVIYATIDDGLITLVTTNLEGHSNYRTIEDLQANLDREMFWRVHRSYLVNINRIKEVVPWFKSSYQLRMDDKK
HTEIPVSRVQTRRLRELFKL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=252, Percent_Identity=31.3492063492063, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082052, Length=257, Percent_Identity=29.5719844357977, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30039; Mature: 30039

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDRATATLTTVVVDDEQLACDELAFLLKDFPEIEVIARGSNGLEAVDLIRKLEPELVFL
CCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
DVNMPGLDGLGVVRRLRDQDLELPHFIFVTAYDQYAVEAFRLEAMDYLLKPVERGRLAET
ECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IERARRAIQEKRAPEFPAPAPKSPSQAATRTKLLVRANSRNFIVDANEVIYATIDDGLIT
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEEECCCCEEEECCCEEEEEECCCEEE
LVTTNLEGHSNYRTIEDLQANLDREMFWRVHRSYLVNINRIKEVVPWFKSSYQLRMDDKK
EEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
HTEIPVSRVQTRRLRELFKL
CCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRDRATATLTTVVVDDEQLACDELAFLLKDFPEIEVIARGSNGLEAVDLIRKLEPELVFL
CCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
DVNMPGLDGLGVVRRLRDQDLELPHFIFVTAYDQYAVEAFRLEAMDYLLKPVERGRLAET
ECCCCCCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IERARRAIQEKRAPEFPAPAPKSPSQAATRTKLLVRANSRNFIVDANEVIYATIDDGLIT
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEEEEEECCCCEEEECCCEEEEEECCCEEE
LVTTNLEGHSNYRTIEDLQANLDREMFWRVHRSYLVNINRIKEVVPWFKSSYQLRMDDKK
EEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
HTEIPVSRVQTRRLRELFKL
CCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]