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The map label for this gene is 116620250

Identifier: 116620250

GI number: 116620250

Start: 1386324

End: 1386908

Strand: Direct

Name: 116620250

Synonym: Acid_1127

Alternate gene names: NA

Gene position: 1386324-1386908 (Clockwise)

Preceding gene: 116620245

Following gene: 116620251

Centisome position: 13.91

GC content: 63.25

Gene sequence:

>585_bases
TTGCAAGATAACGTACCAGGGCCACAGGATCTCACCCGACTGCTTCTGCAGTGGAGGAGTGGGGATAAAGCGGCGCTGGA
CCAGATGACTCCGGTGGTGTACGAGGAATTACGGCGGCTGGCCCGTTATTTCCTGGCGGCCGAACGCTCCAACCACACGT
TGCAGCCCACGGCGCTGGTGCACGAAGCCTATCTCCGGCTGATCGACCAGCGGTCGGTGGACTGGCGCAATCGGGCGCAC
TTCCTGGGAGTGGCGGCAAACATGATGCGGCGCATTCTGATCAACCATGCGGAGGCGCGGAATGCCGCCAAGAGGAACGG
CGGCCAGGATTTGCTGGCGCTGGAGGATGCGCTGGGCGTATTCATCGATCCGCGCGTGGACCTGTTGGAATTGAACCGGT
CGCTGGAACTGCTGACGAGCCTGGATCCGCAGCAGGGGCGGGTGGTGGAACTGCGCTACTTCGGCGGGCTCTCGGTGGAC
GAAACCGCGGAGGTGCTGGGGATTTCGCCGGCGACGGTGAAGCGCGAGTGGAGCACCGCCAAGCTCTGGCTGCTGCAGCA
CATGGAGGGTTCCTCGATCCAATGA

Upstream 100 bases:

>100_bases
AGCATCGATTCACTCAACGATACTATGCCGGGGCTGGCTACTACTTCCGATAGTAATCATGGTACGGCCCGTTCGGAGGG
CACGGTAGAATGGTAGAGTT

Downstream 100 bases:

>100_bases
CCGGCGCGCGCTGGAGCGAGGTCAAGGCGGTGCTTTCCAGCGTGCTGGAGACCGATCCCGCCGGCCGCGCGGTGCGGCTA
GGCGAACTCTGCGGCGGCGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Sigma Factor; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MQDNVPGPQDLTRLLLQWRSGDKAALDQMTPVVYEELRRLARYFLAAERSNHTLQPTALVHEAYLRLIDQRSVDWRNRAH
FLGVAANMMRRILINHAEARNAAKRNGGQDLLALEDALGVFIDPRVDLLELNRSLELLTSLDPQQGRVVELRYFGGLSVD
ETAEVLGISPATVKREWSTAKLWLLQHMEGSSIQ

Sequences:

>Translated_194_residues
MQDNVPGPQDLTRLLLQWRSGDKAALDQMTPVVYEELRRLARYFLAAERSNHTLQPTALVHEAYLRLIDQRSVDWRNRAH
FLGVAANMMRRILINHAEARNAAKRNGGQDLLALEDALGVFIDPRVDLLELNRSLELLTSLDPQQGRVVELRYFGGLSVD
ETAEVLGISPATVKREWSTAKLWLLQHMEGSSIQ
>Mature_194_residues
MQDNVPGPQDLTRLLLQWRSGDKAALDQMTPVVYEELRRLARYFLAAERSNHTLQPTALVHEAYLRLIDQRSVDWRNRAH
FLGVAANMMRRILINHAEARNAAKRNGGQDLLALEDALGVFIDPRVDLLELNRSLELLTSLDPQQGRVVELRYFGGLSVD
ETAEVLGISPATVKREWSTAKLWLLQHMEGSSIQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22022; Mature: 22022

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNVPGPQDLTRLLLQWRSGDKAALDQMTPVVYEELRRLARYFLAAERSNHTLQPTALV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
HEAYLRLIDQRSVDWRNRAHFLGVAANMMRRILINHAEARNAAKRNGGQDLLALEDALGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCE
FIDPRVDLLELNRSLELLTSLDPQQGRVVELRYFGGLSVDETAEVLGISPATVKREWSTA
EECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCHH
KLWLLQHMEGSSIQ
HHHHHHHCCCCCCC
>Mature Secondary Structure
MQDNVPGPQDLTRLLLQWRSGDKAALDQMTPVVYEELRRLARYFLAAERSNHTLQPTALV
CCCCCCCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
HEAYLRLIDQRSVDWRNRAHFLGVAANMMRRILINHAEARNAAKRNGGQDLLALEDALGV
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCE
FIDPRVDLLELNRSLELLTSLDPQQGRVVELRYFGGLSVDETAEVLGISPATVKREWSTA
EECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHCCCCHH
KLWLLQHMEGSSIQ
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA