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The map label for this gene is smpB

Identifier: 116620186

GI number: 116620186

Start: 1310334

End: 1310804

Strand: Reverse

Name: smpB

Synonym: Acid_1059

Alternate gene names: 116620186

Gene position: 1310804-1310334 (Counterclockwise)

Preceding gene: 116620194

Following gene: 116620177

Centisome position: 13.15

GC content: 57.11

Gene sequence:

>471_bases
TTGGCCGACAAGAAAGACTTTGCCTTCAAAATCCTGAGCGATAACCGTCAAGCCGGCCATAACTATTTCCTTTCTGAGCG
TTTTGAATGCGGCATGGTCCTCACCGGCACGGAGGTGAAAGCCGCCAAGGACGCCAAGATCCAGTTAAAGGACGCTTATG
CCAGCGTGCTCGGCGACGAAGCCTGGCTGCTCAATGCCCATATCAGCCAGTACTCCCACGGCAACCGGGAGAACCACCTT
CCCGTGAGGAATCGGAAGCTCCTCCTTCACCGCCGCGAAATCGACAAACTCCAGGAGATCACGCGCGAGAAGGGCCTGGC
GCTCATCCCCACCAAAATTTATATGAAGAACGGCAAGATCAAATGCGAGATTGCCGTTGCCAAAGGCAAAAAACTCTACG
ACAAGCGCGCCGCCGACAAGGCCCGCACCGCCGACGATGAAGCCCGCGCCGAAATGCGCCGCCGGGCGTAA

Upstream 100 bases:

>100_bases
GGCCTTGAGCAGAGAGCTCGTGATAAGATGGGTTTCAACTTCCGATCGGCGATCATCTAAAGCTATTGACGCCGTTGGGC
TTCCACGCGTTGAGGTCAAT

Downstream 100 bases:

>100_bases
GTCAGCCCTCCGCGCCCATCTCTTCTCGCTTCACGCGGTTTGCCCCTCCGGCAAAACGGCGGCAATTTGAGCCAGCATCG
CCGGAAAGTTAACCGGCTTA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDEAWLLNAHISQYSHGNRENHL
PVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKIKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRRA

Sequences:

>Translated_156_residues
MADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDEAWLLNAHISQYSHGNRENHL
PVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKIKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRRA
>Mature_155_residues
ADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDEAWLLNAHISQYSHGNRENHLP
VRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKIKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRRA

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=139, Percent_Identity=38.8489208633094, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_SOLUE (Q02A69)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_822342.1
- ProteinModelPortal:   Q02A69
- SMR:   Q02A69
- STRING:   Q02A69
- GeneID:   4430779
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_1059
- NMPDR:   fig|234267.9.peg.999
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17870; Mature: 17739

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDE
CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHCCC
AWLLNAHISQYSHGNRENHLPVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKI
EEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECEEEEEECCEE
KCEIAVAKGKKLYDKRAADKARTADDEARAEMRRRA
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDE
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEHHHHHHHHCCC
AWLLNAHISQYSHGNRENHLPVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKI
EEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECEEEEEECCEE
KCEIAVAKGKKLYDKRAADKARTADDEARAEMRRRA
EEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA