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The map label for this gene is hupB [C]

Identifier: 116620138

GI number: 116620138

Start: 1258076

End: 1258378

Strand: Reverse

Name: hupB [C]

Synonym: Acid_1011

Alternate gene names: 116620138

Gene position: 1258378-1258076 (Counterclockwise)

Preceding gene: 116620139

Following gene: 116620136

Centisome position: 12.63

GC content: 59.08

Gene sequence:

>303_bases
ATGGCAGCTACAAGACTGACCCAGACGCAACTGGTAAGGCAGTTGGCCGAAAAAGCAGAGGTCAACAATAAAGTCGCGCG
CGCGCTTTTGGACAACCTGGCCGCAACCGCGATTTCGGAAGTGAAGAAGAACGGCGTATTCGTGCTGCCCGGCATCGGCC
GGTTGGTGCGCGTGGACCGCAAGGCTCGCATGGGACGCAACCCTGCGACCGGCGAGGCCATCAAGATCGCCGCTAAGAAG
GTCGTGAAATTCCGTGTCGCGAAGAGCGCGAAAGACGCGATCGTTCCGCCCAAGAAGAAGTAG

Upstream 100 bases:

>100_bases
AAACGTTCAACAACCGGGACCCGTTGGAGTTCCGGTACTGAAAATCCTGTTCGATGGCAATGTGGCGCCCAGCGCTACGA
GAGAATGATAAGGAGAAATA

Downstream 100 bases:

>100_bases
TTTTGCGGGCCGTATTTATTGGATAAACCACGGTCAAAAACAAAAACCCCGCGATGCCCAACCGGCTCGCGGGGTTTTGT
ATTTTTGGATTCTTGTGAAG

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MAATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMGRNPATGEAIKIAAKK
VVKFRVAKSAKDAIVPPKKK

Sequences:

>Translated_100_residues
MAATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMGRNPATGEAIKIAAKK
VVKFRVAKSAKDAIVPPKKK
>Mature_99_residues
AATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMGRNPATGEAIKIAAKKV
VKFRVAKSAKDAIVPPKKK

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=37.0786516853933, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10814; Mature: 10683

Theoretical pI: Translated: 11.94; Mature: 11.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHH
KARMGRNPATGEAIKIAAKKVVKFRVAKSAKDAIVPPKKK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AATRLTQTQLVRQLAEKAEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHH
KARMGRNPATGEAIKIAAKKVVKFRVAKSAKDAIVPPKKK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA