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The map label for this gene is yfcH [H]

Identifier: 116620088

GI number: 116620088

Start: 1199006

End: 1199914

Strand: Reverse

Name: yfcH [H]

Synonym: Acid_0960

Alternate gene names: 116620088

Gene position: 1199914-1199006 (Counterclockwise)

Preceding gene: 116620089

Following gene: 116620083

Centisome position: 12.04

GC content: 66.12

Gene sequence:

>909_bases
ATGAAGATCGTGATCCCCGGCGGCAGCGGACAGGTAGGGCAGATCCTGACGCGTCACTTCCACGCCCAGGGCCACGAAGT
CACGGTGCTGAGGCGCGATCCGCCGCCGGCTGTTGGCGACCTGGAGGGCTGCGATCTCTGTATCAACCTCGCCGGCCGTA
GCGTCAACTGCCGCTACCATCCGGCCAACCGGCGGGCCATCTACGACTCGAGGGTTCTGACGACACAGCGGTTGAACCAG
GTAATCGGCGCTCTCCAACATCCTCCGCGTCTGTGGATCAACGCCAGCACCGCGACCATCTACCGCCACGCGCTCGATCG
GCCGATGGATGAGGCCACCGGCGAATTGGGCGGCAGCGAACCGGGTGCGCCGGAGACCTGGAACTTCTCGATAGAAGTAG
CCAAAGCTTGGGAGGATGCCTTTTTTGCGGGCAGCACGCCGCGCACCCGCAAAATCGCCATCCGCAGCGCGATGACGTTC
AGTCCCGACCGCGGCGGCGTCTTCGACGTGTTTCTCGGCCTGGTGCGGCACGGCCTCGGCGGCCCGCAAGGTTCGGGCGG
CCAGTTCGTCTCCTGGATCCATGACGCGGATTTCGTGCGCGCCATCGACATGCTGATTGCCCGCGAAGAGTTCGAAGGTG
TGGTCAACCTGGCGTCGCCCAACCCCCTGCCCAATCGCGAGTTCCTGCGCGCTCTGCGCGAAGCGTGGGGCGCCCGAATC
GGATTGCCGGCGCCGGCCTGGCTGATTGAGATCGGCACTTGGTTGATGCGGACCGAATCCGAACTCGTCCTCAAAAGCCG
CCGCGTGGTGCCGGGTCGTCTGCTCGACGCGGGCTTCACGTTCCTATTCCCCGAGTGGCCCGCGGCCGCCCGCGAACTGG
TTTCCCGCTGGCGGGGCCGGGCAAGCTAG

Upstream 100 bases:

>100_bases
AAATCCTGGTTCTACGCCGCTACATGCAGTCGCTGCTGCGCGAGCGCAATGCGGTCATCCGCGAATTCGCCGAATCGGAA
GCGTGGCGGAAGGTCCTGCT

Downstream 100 bases:

>100_bases
CTTTGGGCTTCGCGGTTGCGGACGTAAGCTACACCGAGGCGGATCTGGTCGTAACTGATCTCCGCGGGCAGGGCTTCGCG
GAGAGGCTTGAGCCGCTCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKIVIPGGSGQVGQILTRHFHAQGHEVTVLRRDPPPAVGDLEGCDLCINLAGRSVNCRYHPANRRAIYDSRVLTTQRLNQ
VIGALQHPPRLWINASTATIYRHALDRPMDEATGELGGSEPGAPETWNFSIEVAKAWEDAFFAGSTPRTRKIAIRSAMTF
SPDRGGVFDVFLGLVRHGLGGPQGSGGQFVSWIHDADFVRAIDMLIAREEFEGVVNLASPNPLPNREFLRALREAWGARI
GLPAPAWLIEIGTWLMRTESELVLKSRRVVPGRLLDAGFTFLFPEWPAAARELVSRWRGRAS

Sequences:

>Translated_302_residues
MKIVIPGGSGQVGQILTRHFHAQGHEVTVLRRDPPPAVGDLEGCDLCINLAGRSVNCRYHPANRRAIYDSRVLTTQRLNQ
VIGALQHPPRLWINASTATIYRHALDRPMDEATGELGGSEPGAPETWNFSIEVAKAWEDAFFAGSTPRTRKIAIRSAMTF
SPDRGGVFDVFLGLVRHGLGGPQGSGGQFVSWIHDADFVRAIDMLIAREEFEGVVNLASPNPLPNREFLRALREAWGARI
GLPAPAWLIEIGTWLMRTESELVLKSRRVVPGRLLDAGFTFLFPEWPAAARELVSRWRGRAS
>Mature_302_residues
MKIVIPGGSGQVGQILTRHFHAQGHEVTVLRRDPPPAVGDLEGCDLCINLAGRSVNCRYHPANRRAIYDSRVLTTQRLNQ
VIGALQHPPRLWINASTATIYRHALDRPMDEATGELGGSEPGAPETWNFSIEVAKAWEDAFFAGSTPRTRKIAIRSAMTF
SPDRGGVFDVFLGLVRHGLGGPQGSGGQFVSWIHDADFVRAIDMLIAREEFEGVVNLASPNPLPNREFLRALREAWGARI
GLPAPAWLIEIGTWLMRTESELVLKSRRVVPGRLLDAGFTFLFPEWPAAARELVSRWRGRAS

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=307, Percent_Identity=30.6188925081433, Blast_Score=142, Evalue=3e-34,
Organism=Escherichia coli, GI1788642, Length=311, Percent_Identity=32.1543408360129, Blast_Score=128, Evalue=5e-31,
Organism=Drosophila melanogaster, GI28573846, Length=307, Percent_Identity=24.4299674267101, Blast_Score=88, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 33372; Mature: 33372

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVIPGGSGQVGQILTRHFHAQGHEVTVLRRDPPPAVGDLEGCDLCINLAGRSVNCRYH
CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEC
PANRRAIYDSRVLTTQRLNQVIGALQHPPRLWINASTATIYRHALDRPMDEATGELGGSE
CCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCCCC
PGAPETWNFSIEVAKAWEDAFFAGSTPRTRKIAIRSAMTFSPDRGGVFDVFLGLVRHGLG
CCCCCCEEEEEEEEHHHHHHHCCCCCCCCCEEEEHHHEEECCCCCCHHHHHHHHHHHCCC
GPQGSGGQFVSWIHDADFVRAIDMLIAREEFEGVVNLASPNPLPNREFLRALREAWGARI
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHCCCC
GLPAPAWLIEIGTWLMRTESELVLKSRRVVPGRLLDAGFTFLFPEWPAAARELVSRWRGR
CCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCEEECCCCCHHHHHHHHHHCCC
AS
CC
>Mature Secondary Structure
MKIVIPGGSGQVGQILTRHFHAQGHEVTVLRRDPPPAVGDLEGCDLCINLAGRSVNCRYH
CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEC
PANRRAIYDSRVLTTQRLNQVIGALQHPPRLWINASTATIYRHALDRPMDEATGELGGSE
CCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCHHHHHHCCCCCC
PGAPETWNFSIEVAKAWEDAFFAGSTPRTRKIAIRSAMTFSPDRGGVFDVFLGLVRHGLG
CCCCCCEEEEEEEEHHHHHHHCCCCCCCCCEEEEHHHEEECCCCCCHHHHHHHHHHHCCC
GPQGSGGQFVSWIHDADFVRAIDMLIAREEFEGVVNLASPNPLPNREFLRALREAWGARI
CCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHCCCC
GLPAPAWLIEIGTWLMRTESELVLKSRRVVPGRLLDAGFTFLFPEWPAAARELVSRWRGR
CCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHCCCEEECCCCCHHHHHHHHHHCCC
AS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]