Click here to switch to the map view.

The map label for this gene is ycjS [C]

Identifier: 116619972

GI number: 116619972

Start: 1046444

End: 1047721

Strand: Direct

Name: ycjS [C]

Synonym: Acid_0844

Alternate gene names: 116619972

Gene position: 1046444-1047721 (Clockwise)

Preceding gene: 116619971

Following gene: 116619973

Centisome position: 10.5

GC content: 62.52

Gene sequence:

>1278_bases
ATGATCACTCGACGCCAGATTCTTCAAAGCGCCGTTGCACCCATGATCGTTCCGAGCCTGGTGCTCGGCCAACGCGCCGG
GGCCGTTCCGCCCAGCGACAAGATCATCTTCGGTGGCATCGGTATCGGCAGCCGCGGCGCACACGATCTCAGTAAACTGC
TCGACTTCCCCGAGGCTAAGTTCGTCGCCGTCTGCGACGTTCGCAATGAGCGTCGCGAGGAGATTAAGTCGACGGTTGAC
AAGAAGTATGGAAACCGCGATTGCCAGACCTACGACGACCAGTATGCGCTGCTCGCCCGCAAGGACATTGATGCCGTACT
CATCGCCACCGGCGATCGCTGGCACACTCCGCTGGCCATCATCGCAGCCCAACACGGCAAGGATGTCTATTGCGAGAAGC
CCTGCTCCATGTCGATGGAGGAGAGTTGGGCGCTCGCCGATGCCTTCCGCCGCTACAATCGCATCTACCAGGCCGGCTGC
CAGCGGCGCAACGGCGCTAATTTCGAGCTCTGCAAGGAACTGCTGAAATCCGGAGCCTTAGGCAAGCTGCAGACGCTGTA
CGCCAACGTCGGTCCGTCCGTCAATTGGCCTCCGATACCTACCCGCGACTGGCTGGCGGCCGAAGAACTGCCGCCGAAGC
AGGTGCTCGATTGGGATCGCTGGCTGGGGCCCGCGCCATGGCGTCCCTATCATTCCTCCTACGTCCGAGGTGGCTGGCGT
AACTTCTACGACTTTCACGGCGGCGGCATTCTCGAGTGGGGGTCGCATACCGTGGATCTGTGCCACTGGGCCGCGGGCTT
GGATGACACACAGCCGGTGGAGTACACTCCCATCGGCGCCAACACCGGCCCCTACAAAGTGGAATGCAAGTATGCCAACG
GCGTGAAGCTCGTGATGCGCGATGACGGCTGGGATGGTGGCTTAAAGACGGGTTCATGCAGTTTCCGGATCGAAGGCGAC
AGGGGCTGGGTGGAGACCGGCGACGCCACCCGCATTGAGAGTTCCGACAATATCAAGCCCTTACTGCGGCCCACCGAGCC
GGCGAGCCTCGCCCTGGTGAACCACGTGGCGGACCTGCTCCGCTCCATCAAGACACGTCAGTCGCCGCGCGCCACCGCGG
CTGCGGCGGCCAATTCGCACATCACTTGCCACGCAGCCTTCATCGCATACCAGCGGGGCAAGACGCTCTCCTGGGATCCG
GCGAAGCGCGAGTTCACCAATGACGATGTTGCCAACCGCATGCGATCGCGCGCCTTGCGCGAACCGTGGCGGGTTTGA

Upstream 100 bases:

>100_bases
ACTCCCTTCTGAAATTGTATTGACCAGAACAGTTCCGCCGGCTTTTTAGCTTGGCAGCTATTTCAGTGAATTGGATATAC
AATTCTGAATAGCAAAAGCC

Downstream 100 bases:

>100_bases
GCGAAGGAGACGCACCATGCAGCAAACCACACAGCCCGCACCCGCACCACAGGCCGTACTACAGGTCGCGAAGCCGGCGC
CGCCCGTGCCTCCCGCCGAA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MITRRQILQSAVAPMIVPSLVLGQRAGAVPPSDKIIFGGIGIGSRGAHDLSKLLDFPEAKFVAVCDVRNERREEIKSTVD
KKYGNRDCQTYDDQYALLARKDIDAVLIATGDRWHTPLAIIAAQHGKDVYCEKPCSMSMEESWALADAFRRYNRIYQAGC
QRRNGANFELCKELLKSGALGKLQTLYANVGPSVNWPPIPTRDWLAAEELPPKQVLDWDRWLGPAPWRPYHSSYVRGGWR
NFYDFHGGGILEWGSHTVDLCHWAAGLDDTQPVEYTPIGANTGPYKVECKYANGVKLVMRDDGWDGGLKTGSCSFRIEGD
RGWVETGDATRIESSDNIKPLLRPTEPASLALVNHVADLLRSIKTRQSPRATAAAAANSHITCHAAFIAYQRGKTLSWDP
AKREFTNDDVANRMRSRALREPWRV

Sequences:

>Translated_425_residues
MITRRQILQSAVAPMIVPSLVLGQRAGAVPPSDKIIFGGIGIGSRGAHDLSKLLDFPEAKFVAVCDVRNERREEIKSTVD
KKYGNRDCQTYDDQYALLARKDIDAVLIATGDRWHTPLAIIAAQHGKDVYCEKPCSMSMEESWALADAFRRYNRIYQAGC
QRRNGANFELCKELLKSGALGKLQTLYANVGPSVNWPPIPTRDWLAAEELPPKQVLDWDRWLGPAPWRPYHSSYVRGGWR
NFYDFHGGGILEWGSHTVDLCHWAAGLDDTQPVEYTPIGANTGPYKVECKYANGVKLVMRDDGWDGGLKTGSCSFRIEGD
RGWVETGDATRIESSDNIKPLLRPTEPASLALVNHVADLLRSIKTRQSPRATAAAAANSHITCHAAFIAYQRGKTLSWDP
AKREFTNDDVANRMRSRALREPWRV
>Mature_425_residues
MITRRQILQSAVAPMIVPSLVLGQRAGAVPPSDKIIFGGIGIGSRGAHDLSKLLDFPEAKFVAVCDVRNERREEIKSTVD
KKYGNRDCQTYDDQYALLARKDIDAVLIATGDRWHTPLAIIAAQHGKDVYCEKPCSMSMEESWALADAFRRYNRIYQAGC
QRRNGANFELCKELLKSGALGKLQTLYANVGPSVNWPPIPTRDWLAAEELPPKQVLDWDRWLGPAPWRPYHSSYVRGGWR
NFYDFHGGGILEWGSHTVDLCHWAAGLDDTQPVEYTPIGANTGPYKVECKYANGVKLVMRDDGWDGGLKTGSCSFRIEGD
RGWVETGDATRIESSDNIKPLLRPTEPASLALVNHVADLLRSIKTRQSPRATAAAAANSHITCHAAFIAYQRGKTLSWDP
AKREFTNDDVANRMRSRALREPWRV

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 47465; Mature: 47465

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRRQILQSAVAPMIVPSLVLGQRAGAVPPSDKIIFGGIGIGSRGAHDLSKLLDFPEAK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
FVAVCDVRNERREEIKSTVDKKYGNRDCQTYDDQYALLARKDIDAVLIATGDRWHTPLAI
EEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCEEE
IAAQHGKDVYCEKPCSMSMEESWALADAFRRYNRIYQAGCQRRNGANFELCKELLKSGAL
EEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
GKLQTLYANVGPSVNWPPIPTRDWLAAEELPPKQVLDWDRWLGPAPWRPYHSSYVRGGWR
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCCHHHHHHCCHH
NFYDFHGGGILEWGSHTVDLCHWAAGLDDTQPVEYTPIGANTGPYKVECKYANGVKLVMR
HHHHCCCCCEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCEEEEEE
DDGWDGGLKTGSCSFRIEGDRGWVETGDATRIESSDNIKPLLRPTEPASLALVNHVADLL
CCCCCCCCCCCCEEEEEECCCCEEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
RSIKTRQSPRATAAAAANSHITCHAAFIAYQRGKTLSWDPAKREFTNDDVANRMRSRALR
HHHHHCCCCCHHHHHHCCCCEEEEEEEEEHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHC
EPWRV
CCCCC
>Mature Secondary Structure
MITRRQILQSAVAPMIVPSLVLGQRAGAVPPSDKIIFGGIGIGSRGAHDLSKLLDFPEAK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCC
FVAVCDVRNERREEIKSTVDKKYGNRDCQTYDDQYALLARKDIDAVLIATGDRWHTPLAI
EEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCEEEEECCCCCCCCEEE
IAAQHGKDVYCEKPCSMSMEESWALADAFRRYNRIYQAGCQRRNGANFELCKELLKSGAL
EEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
GKLQTLYANVGPSVNWPPIPTRDWLAAEELPPKQVLDWDRWLGPAPWRPYHSSYVRGGWR
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCCCHHHHHHCCHH
NFYDFHGGGILEWGSHTVDLCHWAAGLDDTQPVEYTPIGANTGPYKVECKYANGVKLVMR
HHHHCCCCCEEECCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEECCCEEEEEE
DDGWDGGLKTGSCSFRIEGDRGWVETGDATRIESSDNIKPLLRPTEPASLALVNHVADLL
CCCCCCCCCCCCEEEEEECCCCEEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
RSIKTRQSPRATAAAAANSHITCHAAFIAYQRGKTLSWDPAKREFTNDDVANRMRSRALR
HHHHHCCCCCHHHHHHCCCCEEEEEEEEEHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHC
EPWRV
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA