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The map label for this gene is pehX [H]

Identifier: 116619804

GI number: 116619804

Start: 845136

End: 846743

Strand: Direct

Name: pehX [H]

Synonym: Acid_0674

Alternate gene names: 116619804

Gene position: 845136-846743 (Clockwise)

Preceding gene: 116619803

Following gene: 116619806

Centisome position: 8.48

GC content: 60.95

Gene sequence:

>1608_bases
ATGTCGCATTCGATTCGCACGCACTTACGTCAGGTGATCCTGCTTGCTTTGCCGTGTTGTATTCTGAGCGCGGGATCCGG
GCGGCAGCTATTCAACATCGCCGATTACGGTGCGAAAAAGGATGGCTCCGCACCTGCGACCGATGCCTTCCGGCAAGCCA
TACAGGCCGCGAAGGCCGCTGGCGGCGGCACGATCTATGTGCCGCCAGGCCGATACACTTCCGGCCCCATCGAGTTATTC
AGCAACATGACCCTTGATATCGATGCCGGGGCACGGGTCGAATTCCCCGTCGCGGAACTGCCCTTCACGAGAGGCAGGTA
TCTCGGCGTGGAAACGCTGACGCCGATGCCGCTGATTGGCGGTACCGGCGTGGAGAATGTCACGGTAACCGGGCGCGGGA
TTCTGACCACCGGCGACTACGAGGCGTGGCGGAAGGCCTACCCCGCCGCGTATCAGGAGTACCTGAAGCTCCACAATGGC
GTGATCTCCACCGGCGGCAGTGAAGCCTTCAGCGCCAACGGTCCGCGTTGGGATCACCTTCTGAAAGTGTTGGAGACCGG
GCACCGGGCCTCGGAAGAGGAGTACCGGTTGGCCGCCGCGGAACTGCGCCCTTCATTCATCTGCTTCATGAACGCGAAGA
ACGTGCTGGTAGAGGACGTGCGCATCATCGGCGCGCCCATGTTCGTGGTGCACCTGCTCTATACCGAGAATGCGACTGTC
CGCAACGTCATGATCCAGACCTACCCCGGCCCGCACGCCAATGCGATCGTGGCGGATTCCAGCCGCTTTGTGCACATCAG
CGATAGCTACATCGATACCGGTGACGATGGCATCGTGCTCAAGTCGGGAAAAGATGCCGATGGAATCCGCGTGAACCGTC
CCACCGAGCACGTGACCATTACCAATTGCACCGTGCACCACGCCCACGGCGCAGTCGTAATCGGCAGCGAGACCGCTGGG
AGTATCCGCGATGTGGTGGCCAGTAACATCACCGCCATCGACACCGAGAACGGAATCCGCATCAAAAGCCGCCGCGGACG
CGGAGGCACCGTGGATGACCTCCGTTTCGACAACTGGACGATGGAGAATGTCGGCACCGGCATCGTCGTGACCAGCTATT
ACGTCATGGGCGGCGAATCCGACACGAAAGAGGAGCCGGTCTCGGAGCGCACGCCGAAATTCCGAAACATCGGGATTAGC
AACGTCACCATCCATGGCGCGAAGAAGGTGGTAGATATCGATGGCTTGCCCGAGATGCCGATCACCGGGCTACGTTTGAC
AGACGTCGCTGGCTCCGGCAAGGTGGGGCTCACCGCGCGCTACACCGATGGACTGGAACTGCATCACCTTCAAGTGAATG
CCGAAAGCGGCGCCCCATTCCAATTCGAATCAGCCACGAACCTCGAGCTCGATGGCGTCACCAGCAGGAAGCCGGTTGCC
GCGTCTCCCGTGCTGCGGTTGACGCAGACTCCCGGAGCGGTACTGCGCAACAGCCGTGCCTATCCGGGAACGGGCATCTT
CCTTTCGGCGGGTCCGGGCATGTTGCAGTCGCTCCACCTGGAGAGCAACGTTTTGGACAATGCCAAGACGCCGAAGGAAG
AGCGTTAA

Upstream 100 bases:

>100_bases
GCGGTGTCCGCCGGTGTGGCGCTCGCCGGGGCCATCATCTACACCTTCGGCCTGGGAAAGGTCGCGCCCGTGGAATGGGC
CGAGTAAACAGGGGGAAAGC

Downstream 100 bases:

>100_bases
TTACCAACCGTTTGCTGTCGCGCGCGGCTCGGATCGGAGCCGCGACCGTGAGGGAGCGGTCGCTTATGAAAGACCAGCCT
ACTTCTTCGGCGTAATATCA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Exo-PG [H]

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MSHSIRTHLRQVILLALPCCILSAGSGRQLFNIADYGAKKDGSAPATDAFRQAIQAAKAAGGGTIYVPPGRYTSGPIELF
SNMTLDIDAGARVEFPVAELPFTRGRYLGVETLTPMPLIGGTGVENVTVTGRGILTTGDYEAWRKAYPAAYQEYLKLHNG
VISTGGSEAFSANGPRWDHLLKVLETGHRASEEEYRLAAAELRPSFICFMNAKNVLVEDVRIIGAPMFVVHLLYTENATV
RNVMIQTYPGPHANAIVADSSRFVHISDSYIDTGDDGIVLKSGKDADGIRVNRPTEHVTITNCTVHHAHGAVVIGSETAG
SIRDVVASNITAIDTENGIRIKSRRGRGGTVDDLRFDNWTMENVGTGIVVTSYYVMGGESDTKEEPVSERTPKFRNIGIS
NVTIHGAKKVVDIDGLPEMPITGLRLTDVAGSGKVGLTARYTDGLELHHLQVNAESGAPFQFESATNLELDGVTSRKPVA
ASPVLRLTQTPGAVLRNSRAYPGTGIFLSAGPGMLQSLHLESNVLDNAKTPKEER

Sequences:

>Translated_535_residues
MSHSIRTHLRQVILLALPCCILSAGSGRQLFNIADYGAKKDGSAPATDAFRQAIQAAKAAGGGTIYVPPGRYTSGPIELF
SNMTLDIDAGARVEFPVAELPFTRGRYLGVETLTPMPLIGGTGVENVTVTGRGILTTGDYEAWRKAYPAAYQEYLKLHNG
VISTGGSEAFSANGPRWDHLLKVLETGHRASEEEYRLAAAELRPSFICFMNAKNVLVEDVRIIGAPMFVVHLLYTENATV
RNVMIQTYPGPHANAIVADSSRFVHISDSYIDTGDDGIVLKSGKDADGIRVNRPTEHVTITNCTVHHAHGAVVIGSETAG
SIRDVVASNITAIDTENGIRIKSRRGRGGTVDDLRFDNWTMENVGTGIVVTSYYVMGGESDTKEEPVSERTPKFRNIGIS
NVTIHGAKKVVDIDGLPEMPITGLRLTDVAGSGKVGLTARYTDGLELHHLQVNAESGAPFQFESATNLELDGVTSRKPVA
ASPVLRLTQTPGAVLRNSRAYPGTGIFLSAGPGMLQSLHLESNVLDNAKTPKEER
>Mature_534_residues
SHSIRTHLRQVILLALPCCILSAGSGRQLFNIADYGAKKDGSAPATDAFRQAIQAAKAAGGGTIYVPPGRYTSGPIELFS
NMTLDIDAGARVEFPVAELPFTRGRYLGVETLTPMPLIGGTGVENVTVTGRGILTTGDYEAWRKAYPAAYQEYLKLHNGV
ISTGGSEAFSANGPRWDHLLKVLETGHRASEEEYRLAAAELRPSFICFMNAKNVLVEDVRIIGAPMFVVHLLYTENATVR
NVMIQTYPGPHANAIVADSSRFVHISDSYIDTGDDGIVLKSGKDADGIRVNRPTEHVTITNCTVHHAHGAVVIGSETAGS
IRDVVASNITAIDTENGIRIKSRRGRGGTVDDLRFDNWTMENVGTGIVVTSYYVMGGESDTKEEPVSERTPKFRNIGISN
VTIHGAKKVVDIDGLPEMPITGLRLTDVAGSGKVGLTARYTDGLELHHLQVNAESGAPFQFESATNLELDGVTSRKPVAA
SPVLRLTQTPGAVLRNSRAYPGTGIFLSAGPGMLQSLHLESNVLDNAKTPKEER

Specific function: Contributes significantly to bacterial utilization of polygalacturonate and the induction of pectate lyase in the presence of extracellular pectic polymers [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 PbH1 repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR000743
- InterPro:   IPR013783
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00041 fn3; PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.82 [H]

Molecular weight: Translated: 57461; Mature: 57330

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSIRTHLRQVILLALPCCILSAGSGRQLFNIADYGAKKDGSAPATDAFRQAIQAAKAA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
GGGTIYVPPGRYTSGPIELFSNMTLDIDAGARVEFPVAELPFTRGRYLGVETLTPMPLIG
CCCEEEECCCCCCCCHHHHHCCCEEEECCCCEEECCHHHCCCCCCCEEEEECCCCCCEEC
GTGVENVTVTGRGILTTGDYEAWRKAYPAAYQEYLKLHNGVISTGGSEAFSANGPRWDHL
CCCCCEEEEECCEEEECCCHHHHHHHCHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHH
LKVLETGHRASEEEYRLAAAELRPSFICFMNAKNVLVEDVRIIGAPMFVVHLLYTENATV
HHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHEEEEEECCCCEE
RNVMIQTYPGPHANAIVADSSRFVHISDSYIDTGDDGIVLKSGKDADGIRVNRPTEHVTI
EEEEEEECCCCCCCEEEECCCEEEEEECCEECCCCCEEEEECCCCCCCEEECCCCCEEEE
TNCTVHHAHGAVVIGSETAGSIRDVVASNITAIDTENGIRIKSRRGRGGTVDDLRFDNWT
EEEEEEECCCEEEECCCCCCHHHHHHHCCCEEEECCCCEEEEECCCCCCCCCCEECCCEE
MENVGTGIVVTSYYVMGGESDTKEEPVSERTPKFRNIGISNVTIHGAKKVVDIDGLPEMP
HHHCCCCEEEEEEEEECCCCCCCCCCCHHCCCCHHCCCCCEEEEECCCEEEECCCCCCCC
ITGLRLTDVAGSGKVGLTARYTDGLELHHLQVNAESGAPFQFESATNLELDGVTSRKPVA
CCCEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCCCEEECCCCCCCCCC
ASPVLRLTQTPGAVLRNSRAYPGTGIFLSAGPGMLQSLHLESNVLDNAKTPKEER
CCCEEEEECCCCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SHSIRTHLRQVILLALPCCILSAGSGRQLFNIADYGAKKDGSAPATDAFRQAIQAAKAA
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
GGGTIYVPPGRYTSGPIELFSNMTLDIDAGARVEFPVAELPFTRGRYLGVETLTPMPLIG
CCCEEEECCCCCCCCHHHHHCCCEEEECCCCEEECCHHHCCCCCCCEEEEECCCCCCEEC
GTGVENVTVTGRGILTTGDYEAWRKAYPAAYQEYLKLHNGVISTGGSEAFSANGPRWDHL
CCCCCEEEEECCEEEECCCHHHHHHHCHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHH
LKVLETGHRASEEEYRLAAAELRPSFICFMNAKNVLVEDVRIIGAPMFVVHLLYTENATV
HHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCHHHEEEEEECCCCEE
RNVMIQTYPGPHANAIVADSSRFVHISDSYIDTGDDGIVLKSGKDADGIRVNRPTEHVTI
EEEEEEECCCCCCCEEEECCCEEEEEECCEECCCCCEEEEECCCCCCCEEECCCCCEEEE
TNCTVHHAHGAVVIGSETAGSIRDVVASNITAIDTENGIRIKSRRGRGGTVDDLRFDNWT
EEEEEEECCCEEEECCCCCCHHHHHHHCCCEEEECCCCEEEEECCCCCCCCCCEECCCEE
MENVGTGIVVTSYYVMGGESDTKEEPVSERTPKFRNIGISNVTIHGAKKVVDIDGLPEMP
HHHCCCCEEEEEEEEECCCCCCCCCCCHHCCCCHHCCCCCEEEEECCCEEEECCCCCCCC
ITGLRLTDVAGSGKVGLTARYTDGLELHHLQVNAESGAPFQFESATNLELDGVTSRKPVA
CCCEEEEECCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEECCCCCEEECCCCCCCCCC
ASPVLRLTQTPGAVLRNSRAYPGTGIFLSAGPGMLQSLHLESNVLDNAKTPKEER
CCCEEEEECCCCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2168372; 1409594 [H]