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The map label for this gene is deoC [H]

Identifier: 116619654

GI number: 116619654

Start: 627793

End: 628470

Strand: Direct

Name: deoC [H]

Synonym: Acid_0515

Alternate gene names: 116619654

Gene position: 627793-628470 (Clockwise)

Preceding gene: 116619653

Following gene: 116619656

Centisome position: 6.3

GC content: 65.19

Gene sequence:

>678_bases
ATGGCCCCGCCCCCCACCTACGAAGCGCTCGCCAAGCTGATCGACCATCCCCTGGTCAAGCCCGAACTCACCGATGAAGA
CGTCATCGCAGGCGTGGAACTCGCCAAGCGGTACGGCATCGCCTGTGTCGTCGTTCGCCCCTGCGATATCGATCTCGCCG
TCCGCACCCTGCAGGGCAGCGCCGTCAGGCCGGCCGCCGCCGTCGGCTACCCCCACGGCTCTTCCAACACCGGCACCAAG
CTTTACGAAGCTCGCGACATGCTGCGCCGCGGCGCGCGCGAGATCGACCTGGTGATCGCCATTTCCAAGGTACGCTCGCG
CGAATTCCAGCACGTGCAATCGGAACTGCTCCAACTCTCCGAGTTGTGCCACAAGGAAGGCGCCCTGCTCAAGGTCAACC
TCGAAAACGCCTACCTTACCGACGAGCTGAAAATCATCGCCTGCCGCTGCTGCGAACGCGCCGAAGTCGATTTCGTTCAG
ACCACCGCGCCAGACATTCCGCTCGTCCGCAAGAATCTCCCCGAGGAAATCGGCATCAAAGCCGCCGGCGACATCCGCAC
CCTCGACCAGGCCCTCGAGGCCCTCACTGCCGGAGCCACCCGCATCGGCACCACCACTCCCGCCGCCATCCTCGACGAAT
GGAAGGCCCGCCTCACCCCGCCGCCAGCGACCTCTTAG

Upstream 100 bases:

>100_bases
ATGAGGCCCAGCAGGCGTGCACGGAGCGCAAGACGCTCGGCCTGAACTGCGGCGCGCCGGCCGCGTCCACCGCGCACTCG
CCGGCCAAGCGCAAGAAATA

Downstream 100 bases:

>100_bases
CACAGGGTTCATTCTTGGGGGTGCCAGCCGCGGCCGAGGATCGCCACGCGAACCGCGACCGTCAGGGAGCGATCTACACG
CATTATTACTCAATCGTGAA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAPPPTYEALAKLIDHPLVKPELTDEDVIAGVELAKRYGIACVVVRPCDIDLAVRTLQGSAVRPAAAVGYPHGSSNTGTK
LYEARDMLRRGAREIDLVIAISKVRSREFQHVQSELLQLSELCHKEGALLKVNLENAYLTDELKIIACRCCERAEVDFVQ
TTAPDIPLVRKNLPEEIGIKAAGDIRTLDQALEALTAGATRIGTTTPAAILDEWKARLTPPPATS

Sequences:

>Translated_225_residues
MAPPPTYEALAKLIDHPLVKPELTDEDVIAGVELAKRYGIACVVVRPCDIDLAVRTLQGSAVRPAAAVGYPHGSSNTGTK
LYEARDMLRRGAREIDLVIAISKVRSREFQHVQSELLQLSELCHKEGALLKVNLENAYLTDELKIIACRCCERAEVDFVQ
TTAPDIPLVRKNLPEEIGIKAAGDIRTLDQALEALTAGATRIGTTTPAAILDEWKARLTPPPATS
>Mature_224_residues
APPPTYEALAKLIDHPLVKPELTDEDVIAGVELAKRYGIACVVVRPCDIDLAVRTLQGSAVRPAAAVGYPHGSSNTGTKL
YEARDMLRRGAREIDLVIAISKVRSREFQHVQSELLQLSELCHKEGALLKVNLENAYLTDELKIIACRCCERAEVDFVQT
TAPDIPLVRKNLPEEIGIKAAGDIRTLDQALEALTAGATRIGTTTPAAILDEWKARLTPPPATS

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24441; Mature: 24310

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPPPTYEALAKLIDHPLVKPELTDEDVIAGVELAKRYGIACVVVRPCDIDLAVRTLQGS
CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHEECCCC
AVRPAAAVGYPHGSSNTGTKLYEARDMLRRGAREIDLVIAISKVRSREFQHVQSELLQLS
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHH
ELCHKEGALLKVNLENAYLTDELKIIACRCCERAEVDFVQTTAPDIPLVRKNLPEEIGIK
HHHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHCCCHHHCCC
AAGDIRTLDQALEALTAGATRIGTTTPAAILDEWKARLTPPPATS
CCCCHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
APPPTYEALAKLIDHPLVKPELTDEDVIAGVELAKRYGIACVVVRPCDIDLAVRTLQGS
CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCHHHEECCCC
AVRPAAAVGYPHGSSNTGTKLYEARDMLRRGAREIDLVIAISKVRSREFQHVQSELLQLS
CCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHH
ELCHKEGALLKVNLENAYLTDELKIIACRCCERAEVDFVQTTAPDIPLVRKNLPEEIGIK
HHHHCCCCEEEEECCCCEEHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHCCCHHHCCC
AAGDIRTLDQALEALTAGATRIGTTTPAAILDEWKARLTPPPATS
CCCCHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]