Click here to switch to the map view.

The map label for this gene is allB [C]

Identifier: 116619202

GI number: 116619202

Start: 83455

End: 85095

Strand: Direct

Name: allB [C]

Synonym: Acid_0057

Alternate gene names: 116619202

Gene position: 83455-85095 (Clockwise)

Preceding gene: 116619201

Following gene: 116619204

Centisome position: 0.84

GC content: 63.01

Gene sequence:

>1641_bases
ATGCCGATCCTGCTGCCCGTCCTGCTCTTCGCCGCCGCAGTTACTCCCTACGATGTCGTGATTCGCAATGGGCACGTGAT
CGATGGGACGGGGTCGCCCTGGTATGCCGCCGATATCGGTATTCGCGCCGGTAAGATCGCGGCGATCGGAAAACTCGCGG
GCACGCCGGCCAAGCGGACGATCGATGCGCGCGGGATGGTGGTCGCGCCCGGGTTCATCGACATGCTCGGACAATCGGAG
CTGACGATCCTGGTAAACCCGCACCTGCCCTCGAAGATTTATCAGGGGATCACGACCGAGATCACAGGCGAAGGCGGCTC
GATCGCGCCCTTGAACGACGCTATCCTCAAGGCCGACCACGTCACCTACGAGCACTATGGCGTGCAGCCCACCTGGCGCA
CGTTTCGCGACTACTTCGCGCGGCTTCGCAAGCAGGGGATTGGGATCAACCTCGCGACCTACGTCGGCGCCACGCAGGTG
CGCCGCATGGTGCTGGGCGACGACCATCGCGCGCCCTCGGCGGAAGAACTGGAGCGCATGAAGGCCCTGGTGCGGGATGC
GATGCGCGAGGGCGCAATCGGGCTTTCCACTGCGCTGCAATACGCGCCGGCGCCTTACGCCAAGACCGAAGAACTGGTCG
CGCTCGCGGCCGAGGCGGCGACTTTCGGCGGCACCTACGCCTCGCACATTCGCGACGAGGGCGATGCCATTCTGGCCGCG
CTCGACGAAGCCTTCCGCATCGGCCGCGAGGCGAAGATTCCAGTGGAGATCTGGCACTTGAAGGCGGCGGGAAAATCCAA
CTGGGGGCGCATGCCGGACATCGTCGCTCGGATCGAGGCGGCGCGGAAATCGGGTCTCGACGTGGCCGCCGACACCTACG
GTTATCCGGCGGCGTTCAATACTTTTTCGGCGGTGATTCCACCGTGGGCCCACGATGGCGGCGATAAGAAGCTGATCGAG
CGGCTCAAGGACCCGGCGATGCGGGCGCGCATCCGCAAAGAGATGGAAACTCCTTCGAGCGACTGGAACAACGAGTGGCA
GCAGGTGAAAGGGCCCGAGTCGTTCATTCTGAGCGCGGTGCAGAATCCCAAGCTGATGCCGCTGCAGGGGAAGACGATCG
CGGAAATCGCGAAGCTCTGGAACAAGGACCCGATCGATACCGTGTTCGACATCCTGATCGAGGACGAGGCCTTCACGATG
GTTGGCATGTTCATCATGAGCGAGCCCGATGTGGCGCTGGCGATCCGCCAGCCCTGGGTTTCGATCTGCAACGATTCTCA
GGGCGCCGCGCTCGATGGCGTGCTCGGAAGGGAGCATCCGCACCCGCGCGCATATGGCACATTCCCTCGAATTCTGCGCA
AATATGTCCGCGAAGAGAAGCTGCTGACGCTGGAGGATGCGATCCGTAAATTCACGTCGCTACCGGCGCAGCGCATGCGT
TTCGCGGACCGCGGTGTGTTGAAAGCAGGCATGTGGGCAGACGTCGTCGTCTTCGACCCGGAGACGGTGCGCGACGTAGC
CACGTTCGATCACCCGAATCAACTCTCCGAAGGCATGCGCTTTGTCCTGGTGAATGGTGTACCGGTCATCGAGGAAGGCA
AGATGACGAACGGGCTCCCGGGAAAGGTGTTGAGCAGGTAG

Upstream 100 bases:

>100_bases
CATCGATGCGTTCACGATGGGCGGAATTGCGCGTAATGAAGGCTTGAGGGTGGACCAGTTCAAGAAGTTGCTGTAACCTG
GCACGGCTTATACTTCTCCT

Downstream 100 bases:

>100_bases
CCGCCTTGAAGGCCTTTTCGAAACCTGCCAGCGAGCGCCGGATCGACTCCAGCGAGATGGTCAACGACAGACGCATATAG
CCGGGTTTCCCGAAGCCCGT

Product: dihydroorotase

Products: NA

Alternate protein names: N-acyl-D-glutamate amidohydrolase [H]

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MPILLPVLLFAAAVTPYDVVIRNGHVIDGTGSPWYAADIGIRAGKIAAIGKLAGTPAKRTIDARGMVVAPGFIDMLGQSE
LTILVNPHLPSKIYQGITTEITGEGGSIAPLNDAILKADHVTYEHYGVQPTWRTFRDYFARLRKQGIGINLATYVGATQV
RRMVLGDDHRAPSAEELERMKALVRDAMREGAIGLSTALQYAPAPYAKTEELVALAAEAATFGGTYASHIRDEGDAILAA
LDEAFRIGREAKIPVEIWHLKAAGKSNWGRMPDIVARIEAARKSGLDVAADTYGYPAAFNTFSAVIPPWAHDGGDKKLIE
RLKDPAMRARIRKEMETPSSDWNNEWQQVKGPESFILSAVQNPKLMPLQGKTIAEIAKLWNKDPIDTVFDILIEDEAFTM
VGMFIMSEPDVALAIRQPWVSICNDSQGAALDGVLGREHPHPRAYGTFPRILRKYVREEKLLTLEDAIRKFTSLPAQRMR
FADRGVLKAGMWADVVVFDPETVRDVATFDHPNQLSEGMRFVLVNGVPVIEEGKMTNGLPGKVLSR

Sequences:

>Translated_546_residues
MPILLPVLLFAAAVTPYDVVIRNGHVIDGTGSPWYAADIGIRAGKIAAIGKLAGTPAKRTIDARGMVVAPGFIDMLGQSE
LTILVNPHLPSKIYQGITTEITGEGGSIAPLNDAILKADHVTYEHYGVQPTWRTFRDYFARLRKQGIGINLATYVGATQV
RRMVLGDDHRAPSAEELERMKALVRDAMREGAIGLSTALQYAPAPYAKTEELVALAAEAATFGGTYASHIRDEGDAILAA
LDEAFRIGREAKIPVEIWHLKAAGKSNWGRMPDIVARIEAARKSGLDVAADTYGYPAAFNTFSAVIPPWAHDGGDKKLIE
RLKDPAMRARIRKEMETPSSDWNNEWQQVKGPESFILSAVQNPKLMPLQGKTIAEIAKLWNKDPIDTVFDILIEDEAFTM
VGMFIMSEPDVALAIRQPWVSICNDSQGAALDGVLGREHPHPRAYGTFPRILRKYVREEKLLTLEDAIRKFTSLPAQRMR
FADRGVLKAGMWADVVVFDPETVRDVATFDHPNQLSEGMRFVLVNGVPVIEEGKMTNGLPGKVLSR
>Mature_545_residues
PILLPVLLFAAAVTPYDVVIRNGHVIDGTGSPWYAADIGIRAGKIAAIGKLAGTPAKRTIDARGMVVAPGFIDMLGQSEL
TILVNPHLPSKIYQGITTEITGEGGSIAPLNDAILKADHVTYEHYGVQPTWRTFRDYFARLRKQGIGINLATYVGATQVR
RMVLGDDHRAPSAEELERMKALVRDAMREGAIGLSTALQYAPAPYAKTEELVALAAEAATFGGTYASHIRDEGDAILAAL
DEAFRIGREAKIPVEIWHLKAAGKSNWGRMPDIVARIEAARKSGLDVAADTYGYPAAFNTFSAVIPPWAHDGGDKKLIER
LKDPAMRARIRKEMETPSSDWNNEWQQVKGPESFILSAVQNPKLMPLQGKTIAEIAKLWNKDPIDTVFDILIEDEAFTMV
GMFIMSEPDVALAIRQPWVSICNDSQGAALDGVLGREHPHPRAYGTFPRILRKYVREEKLLTLEDAIRKFTSLPAQRMRF
ADRGVLKAGMWADVVVFDPETVRDVATFDHPNQLSEGMRFVLVNGVPVIEEGKMTNGLPGKVLSR

Specific function: Involved In The Anaerobic Utilization Of Allantoin. [C]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.82 [H]

Molecular weight: Translated: 59968; Mature: 59837

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPILLPVLLFAAAVTPYDVVIRNGHVIDGTGSPWYAADIGIRAGKIAAIGKLAGTPAKRT
CCHHHHHHHHHHHCCCHHEEEECCEEECCCCCCEEEEECCCCCCCHHHHHHHCCCCCHHE
IDARGMVVAPGFIDMLGQSELTILVNPHLPSKIYQGITTEITGEGGSIAPLNDAILKADH
ECCCCEEECCHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHCC
VTYEHYGVQPTWRTFRDYFARLRKQGIGINLATYVGATQVRRMVLGDDHRAPSAEELERM
EEHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
KALVRDAMREGAIGLSTALQYAPAPYAKTEELVALAAEAATFGGTYASHIRDEGDAILAA
HHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
LDEAFRIGREAKIPVEIWHLKAAGKSNWGRMPDIVARIEAARKSGLDVAADTYGYPAAFN
HHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHC
TFSAVIPPWAHDGGDKKLIERLKDPAMRARIRKEMETPSSDWNNEWQQVKGPESFILSAV
CHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHH
QNPKLMPLQGKTIAEIAKLWNKDPIDTVFDILIEDEAFTMVGMFIMSEPDVALAIRQPWV
CCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCHH
SICNDSQGAALDGVLGREHPHPRAYGTFPRILRKYVREEKLLTLEDAIRKFTSLPAQRMR
HHCCCCCCCCHHCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
FADRGVLKAGMWADVVVFDPETVRDVATFDHPNQLSEGMRFVLVNGVPVIEEGKMTNGLP
HHHCCHHHCCCCEEEEEECCHHHHHHHHCCCHHHHHCCCEEEEECCCCEEECCCCCCCCC
GKVLSR
CHHHCC
>Mature Secondary Structure 
PILLPVLLFAAAVTPYDVVIRNGHVIDGTGSPWYAADIGIRAGKIAAIGKLAGTPAKRT
CHHHHHHHHHHHCCCHHEEEECCEEECCCCCCEEEEECCCCCCCHHHHHHHCCCCCHHE
IDARGMVVAPGFIDMLGQSELTILVNPHLPSKIYQGITTEITGEGGSIAPLNDAILKADH
ECCCCEEECCHHHHHCCCCCEEEEECCCCCHHHHCCCCEEEECCCCCCCCCCHHHHHHCC
VTYEHYGVQPTWRTFRDYFARLRKQGIGINLATYVGATQVRRMVLGDDHRAPSAEELERM
EEHHHCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHCHHHHHHHHHCCCCCCCCHHHHHHH
KALVRDAMREGAIGLSTALQYAPAPYAKTEELVALAAEAATFGGTYASHIRDEGDAILAA
HHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHH
LDEAFRIGREAKIPVEIWHLKAAGKSNWGRMPDIVARIEAARKSGLDVAADTYGYPAAFN
HHHHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCHHHC
TFSAVIPPWAHDGGDKKLIERLKDPAMRARIRKEMETPSSDWNNEWQQVKGPESFILSAV
CHHHHCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHH
QNPKLMPLQGKTIAEIAKLWNKDPIDTVFDILIEDEAFTMVGMFIMSEPDVALAIRQPWV
CCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCHH
SICNDSQGAALDGVLGREHPHPRAYGTFPRILRKYVREEKLLTLEDAIRKFTSLPAQRMR
HHCCCCCCCCHHCHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
FADRGVLKAGMWADVVVFDPETVRDVATFDHPNQLSEGMRFVLVNGVPVIEEGKMTNGLP
HHHCCHHHCCCCEEEEEECCHHHHHHHHCCCHHHHHCCCEEEEECCCCEEECCCCCCCCC
GKVLSR
CHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8537313 [H]