Click here to switch to the map view.

The map label for this gene is 116517108

Identifier: 116517108

GI number: 116517108

Start: 1321566

End: 1321823

Strand: Reverse

Name: 116517108

Synonym: SPD_1303

Alternate gene names: NA

Gene position: 1321823-1321566 (Counterclockwise)

Preceding gene: 116516232

Following gene: 116516669

Centisome position: 64.6

GC content: 40.31

Gene sequence:

>258_bases
ATGGATCCGAAAAAAATTGCTCGTATCAATGAGCTTGCTAAAAAGAAAAAAACAGAAGGCTTAACACCAGAAGAAAAAGT
GGAACAAGCCAAACTACGTGAGGAGTACATCGAAGGTTATCGCCGCGCTGTTCGTCACCACATTGAAGGAATCAAAATTG
TGGACGAAGAAGGAAACGATGTTACACCAGAAAAACTACGCCAAGTACAACGTGAAAAAGGATTACATGGCCGTAGTCTT
GATGATCCAAATTCATAA

Upstream 100 bases:

>100_bases
CACAACTAACCAAGAAAGCAGCTAAGTTTGCTTGTTTTAACCAAATTAACACTAAATAAAATTTGATAAACGGACTTTAT
CTTATTACAGAGGAGAAGAA

Downstream 100 bases:

>100_bases
TATGTATTCTTTCTTTTAACAAAGATAGATGAAACGATAACAAAGAGACTAGCAGTTTGTGTTTGCTAGTCTTTTTTCGC
TAAAAAAGGAACCATAATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGNDVTPEKLRQVQREKGLHGRSL
DDPNS

Sequences:

>Translated_85_residues
MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGNDVTPEKLRQVQREKGLHGRSL
DDPNS
>Mature_85_residues
MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGNDVTPEKLRQVQREKGLHGRSL
DDPNS

Specific function: Unknown

COG id: COG4224

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0291 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1303_STRP2 (Q04JM9)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816769.1
- ProteinModelPortal:   Q04JM9
- SMR:   Q04JM9
- STRING:   Q04JM9
- EnsemblBacteria:   EBSTRT00000019242
- GeneID:   4441880
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1303
- eggNOG:   COG4224
- GeneTree:   EBGT00050000027964
- HOGENOM:   HBG727491
- OMA:   TIENTTI
- ProtClustDB:   PRK02539
- GO:   GO:0005737
- HAMAP:   MF_01103
- InterPro:   IPR009242
- InterPro:   IPR023218
- Gene3D:   G3DSA:1.10.287.540

Pfam domain/function: PF05979 DUF896

EC number: NA

Molecular weight: Translated: 9873; Mature: 9873

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGND
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
VTPEKLRQVQREKGLHGRSLDDPNS
CCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MDPKKIARINELAKKKKTEGLTPEEKVEQAKLREEYIEGYRRAVRHHIEGIKIVDEEGND
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
VTPEKLRQVQREKGLHGRSLDDPNS
CCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA