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The map label for this gene is 116516974

Identifier: 116516974

GI number: 116516974

Start: 1539701

End: 1540552

Strand: Direct

Name: 116516974

Synonym: SPD_1518

Alternate gene names: NA

Gene position: 1539701-1540552 (Clockwise)

Preceding gene: 116516240

Following gene: 116516792

Centisome position: 75.25

GC content: 31.46

Gene sequence:

>852_bases
ATGAGATGGGATTATGGACAAATTTTTAAAGAAATTCGAAAGTCAAAAGGATTGACCCAACAAGATGTATGTGGACAAGT
CATACATCGAACAACTCTAACAAATATTGAACACGGTAAAGTTATTCCCAGTTTTGAAAACATGGTATTTCTTCTTGAAC
AAATTGATATGAGCTTGGCAGAATTCAAGTATATATGCAACGAATACCATCCTAGTAAAAGGCGAGATATTATTGTAGAG
AGCCAAAATCCGTCTACTTTTCAAGATACTAGAAAAATGGTTGAACTCACTGAGAAATGTCAAAAATATCTTAAGACACA
TCACGATGTTCCTATTCAAAATATCTATCGTCATACAAAAATTGTCACAGAATTACGAACTAAAGGATTCAAAAACAACC
ACGTCTTGAAAGATTTGTATGAAGAAATTTGGGACTATCTTGAACCTATGGATACATGGTACATTAGTGATTTGAAATTG
CTTGGAACCATTCTCTTTTTCTTTCCTTCTGAAAATCTTCCCCTTCTTATTGATAGAATTATGAAAACCATCGAGAAATA
TAAATACTTCCGAGAAACAAAAGCATTTTTATCATCTTTTTTAGCCAATCTCTCCACTGTATATTTTCAACATCATTTAT
TCAAAGAATGTGAAACAATCACCCTACAACTTTTGGTATTAGCAGAAGAATTAAAAATATACGATATTCTTGGATTCTCT
CAAGTACGCTTGGGAATACTACAACATAACTCCGATTTGATTGATAAAGGAATAACTTTATTACGACTAACCAAAGAAGA
GGCATTAGTTAAAATACTCGAAAAAGAAATTAATGATTTTTCAAACCTATAA

Upstream 100 bases:

>100_bases
AGCCCATGACTTTTTCCCTCCTTTTTGATATAATAATACCACCTTTTTCTACGTTTTTTATAAATGTAGAAAATATTCAC
ATTTTTCTAGGAGGAACAAT

Downstream 100 bases:

>100_bases
TTTGTAATAACTCTCATCATTTTATTATAGTAGATTGTAATAGAATGTGAACGAATCAATTAGGGGATCTAAAGCATTTT
ATACCAATGTTTTATAAGTT

Product: transcriptional activator, Rgg/GadR/MutR family protein

Products: NA

Alternate protein names: Transcriptional Activator; Transcription Regulator

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRWDYGQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYICNEYHPSKRRDIIVE
SQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIVTELRTKGFKNNHVLKDLYEEIWDYLEPMDTWYISDLKL
LGTILFFFPSENLPLLIDRIMKTIEKYKYFRETKAFLSSFLANLSTVYFQHHLFKECETITLQLLVLAEELKIYDILGFS
QVRLGILQHNSDLIDKGITLLRLTKEEALVKILEKEINDFSNL

Sequences:

>Translated_283_residues
MRWDYGQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYICNEYHPSKRRDIIVE
SQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIVTELRTKGFKNNHVLKDLYEEIWDYLEPMDTWYISDLKL
LGTILFFFPSENLPLLIDRIMKTIEKYKYFRETKAFLSSFLANLSTVYFQHHLFKECETITLQLLVLAEELKIYDILGFS
QVRLGILQHNSDLIDKGITLLRLTKEEALVKILEKEINDFSNL
>Mature_283_residues
MRWDYGQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYICNEYHPSKRRDIIVE
SQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIVTELRTKGFKNNHVLKDLYEEIWDYLEPMDTWYISDLKL
LGTILFFFPSENLPLLIDRIMKTIEKYKYFRETKAFLSSFLANLSTVYFQHHLFKECETITLQLLVLAEELKIYDILGFS
QVRLGILQHNSDLIDKGITLLRLTKEEALVKILEKEINDFSNL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33607; Mature: 33607

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA