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The map label for this gene is yhcF [H]

Identifier: 116516792

GI number: 116516792

Start: 1546402

End: 1546767

Strand: Direct

Name: yhcF [H]

Synonym: SPD_1524

Alternate gene names: 116516792

Gene position: 1546402-1546767 (Clockwise)

Preceding gene: 116516974

Following gene: 116515972

Centisome position: 75.58

GC content: 41.53

Gene sequence:

>366_bases
ATGTCCTGGACATTTGACAACAAAAAACCCATCTATTTACAGATTATGGAAAAAATCAAGCTTCAGATTGTTTCCCATAC
ACTGGAACCCAATCAACAACTTCCAACCGTGAGGGAGCTAGCTAGCGAGGCTGGTGTCAATCCCAATACCATCCAAAGAG
CCTTATCAGACCTTGAACGAGAAGGATTTGTCTACAGCAAGCGAACAACTGGACGATTTGTGACTAAGGATAAGGAGCTA
ATCGCCCAGTCACGCAAACAATTATCAGAAGAAGAATTGGAACACTTCGTTTCCTCCATGACCCATTTTGGCTATGAAAA
AGAAGAACTACCAGGCGTAGTCAGTGATTATATTAAAGGAGTTTAA

Upstream 100 bases:

>100_bases
TTTAAGCGATTCCCAAAACAATTCTTCTTTTTGCTTGACAAGTTTTTTGTTTTGTTGTATTATTTAATTAAGACAAAAGG
GTAAGAGAAAGGAGACCAAG

Downstream 100 bases:

>100_bases
GCCTATGTCATTACTAGCATTTGAAAATGTATCCAAATCATATGGAGCAACACCAGCCCTTGAAAATGTTTCTCTTGACA
TTCCAGCTGGAAAAATTGTC

Product: transcriptional regulator, GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLEREGFVYSKRTTGRFVTKDKEL
IAQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKGV

Sequences:

>Translated_121_residues
MSWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLEREGFVYSKRTTGRFVTKDKEL
IAQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKGV
>Mature_120_residues
SWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLEREGFVYSKRTTGRFVTKDKELI
AQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKGV

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13959; Mature: 13828

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLER
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
EGFVYSKRTTGRFVTKDKELIAQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKG
CCCEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCC
V
C
>Mature Secondary Structure 
SWTFDNKKPIYLQIMEKIKLQIVSHTLEPNQQLPTVRELASEAGVNPNTIQRALSDLER
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
EGFVYSKRTTGRFVTKDKELIAQSRKQLSEEELEHFVSSMTHFGYEKEELPGVVSDYIKG
CCCEECCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]