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The map label for this gene is ribE [H]

Identifier: 116516797

GI number: 116516797

Start: 172039

End: 172674

Strand: Reverse

Name: ribE [H]

Synonym: SPD_0168

Alternate gene names: 116516797

Gene position: 172674-172039 (Counterclockwise)

Preceding gene: 116515773

Following gene: 116516104

Centisome position: 8.44

GC content: 33.49

Gene sequence:

>636_bases
ATGTTCACAGGAATAATTGAAGAAATCGGAAAAGTTGAAAGAATACAGAAAGACTCTCGTAATTGTAAACTATCAATTAA
AGCCTCAAAAATATTAACGGATATCCATTTAGGCGATAGTATAGCAGTAAATGGTATCTGTCTTACAGTTACTCATTTCA
ATCATCAATCCTTTACAGTTGATGTAATGAATGAAACATGGAGTCGAACAGCTCTTACTCTATTAAAACATGGAAGTGAG
GTGAATCTAGAAAGAGCCTTATCTGTCAACGGTCGACTTGGGGGTCACGTCGTTACAGGACACATTGATGGTACAGGAAA
AATCTCGTCAATAAAAAAAGATGATAATGCTGTATGGTATCAAATCAACACACAAAAAGAAATTTTAGATTTAATAGTTG
AAAAAGGATCTATTACAATTGACGGCATTAGTCTGACTGTCGCTAAAGTCTCCAAAGTAAACTTTTCAGTATCTGTTATC
CCTCATACCTTGGAACAAACCATTCTTAAGAGTAAACAAGTCGGGAGTACAGTAAATCTTGAAAATGATATCTTAGGTAA
ATATGTGCAAAAACTGATGGATAACTCTCCAAAATCAGAAATATCTAAGGAACTATTATATCAAAATGGATTTTAG

Upstream 100 bases:

>100_bases
GTGAAGGCATTTCTTTGCCAAATGACGCTATTAGATTGAAACCTTATGCTTTTTCTCAAATAGGAAATGACTATCTCATA
GAAAGTGAAGTGATTTATCC

Downstream 100 bases:

>100_bases
CAGAAAGGATAATTAGTCAATGGAATATCGAAAAATACAAGAAGCATTAGAAGCATTGCAGAAGGGACGACTTGTTCTTG
TTATAGACGACAAGGATAGA

Product: riboflavin synthase subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFTGIIEEIGKVERIQKDSRNCKLSIKASKILTDIHLGDSIAVNGICLTVTHFNHQSFTVDVMNETWSRTALTLLKHGSE
VNLERALSVNGRLGGHVVTGHIDGTGKISSIKKDDNAVWYQINTQKEILDLIVEKGSITIDGISLTVAKVSKVNFSVSVI
PHTLEQTILKSKQVGSTVNLENDILGKYVQKLMDNSPKSEISKELLYQNGF

Sequences:

>Translated_211_residues
MFTGIIEEIGKVERIQKDSRNCKLSIKASKILTDIHLGDSIAVNGICLTVTHFNHQSFTVDVMNETWSRTALTLLKHGSE
VNLERALSVNGRLGGHVVTGHIDGTGKISSIKKDDNAVWYQINTQKEILDLIVEKGSITIDGISLTVAKVSKVNFSVSVI
PHTLEQTILKSKQVGSTVNLENDILGKYVQKLMDNSPKSEISKELLYQNGF
>Mature_211_residues
MFTGIIEEIGKVERIQKDSRNCKLSIKASKILTDIHLGDSIAVNGICLTVTHFNHQSFTVDVMNETWSRTALTLLKHGSE
VNLERALSVNGRLGGHVVTGHIDGTGKISSIKKDDNAVWYQINTQKEILDLIVEKGSITIDGISLTVAKVSKVNFSVSVI
PHTLEQTILKSKQVGSTVNLENDILGKYVQKLMDNSPKSEISKELLYQNGF

Specific function: Riboflavin synthase is a bifunctional enzyme complex catalyzing the formation of riboflavin from 5-amino-6-(1'-D)- ribityl-amino-2,4(1H,3H)-pyrimidinedione and L-3,4-dihydrohy-2- butanone-4-phosphate via 6,7-dimethyl-8-lumazine. The alpha subunit catalyze

COG id: COG0307

COG function: function code H; Riboflavin synthase alpha chain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 lumazine-binding repeats [H]

Homologues:

Organism=Escherichia coli, GI1787952, Length=186, Percent_Identity=38.7096774193548, Blast_Score=120, Evalue=6e-29,
Organism=Saccharomyces cerevisiae, GI6319733, Length=216, Percent_Identity=40.7407407407407, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001783
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00677 Lum_binding [H]

EC number: =2.5.1.9 [H]

Molecular weight: Translated: 23245; Mature: 23245

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS00693 LUM_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTGIIEEIGKVERIQKDSRNCKLSIKASKILTDIHLGDSIAVNGICLTVTHFNHQSFTV
CCCHHHHHHHHHHHHHCCCCCEEEEEEHHHEEEEEECCCCEEECCEEEEEEEECCCEEEE
DVMNETWSRTALTLLKHGSEVNLERALSVNGRLGGHVVTGHIDGTGKISSIKKDDNAVWY
EECCCCHHHHHHHHHHCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCCCEECCCCEEEE
QINTQKEILDLIVEKGSITIDGISLTVAKVSKVNFSVSVIPHTLEQTILKSKQVGSTVNL
EECCHHHHHHHHHHCCCEEEECEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
ENDILGKYVQKLMDNSPKSEISKELLYQNGF
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MFTGIIEEIGKVERIQKDSRNCKLSIKASKILTDIHLGDSIAVNGICLTVTHFNHQSFTV
CCCHHHHHHHHHHHHHCCCCCEEEEEEHHHEEEEEECCCCEEECCEEEEEEEECCCEEEE
DVMNETWSRTALTLLKHGSEVNLERALSVNGRLGGHVVTGHIDGTGKISSIKKDDNAVWY
EECCCCHHHHHHHHHHCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCCCEECCCCEEEE
QINTQKEILDLIVEKGSITIDGISLTVAKVSKVNFSVSVIPHTLEQTILKSKQVGSTVNL
EECCHHHHHHHHHHCCCEEEECEEEEEEEEEEEEEEEEECCHHHHHHHHHHHHCCCCCCC
ENDILGKYVQKLMDNSPKSEISKELLYQNGF
CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8522537 [H]