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The map label for this gene is yrrO [H]

Identifier: 116516724

GI number: 116516724

Start: 1285696

End: 1286982

Strand: Reverse

Name: yrrO [H]

Synonym: SPD_1258

Alternate gene names: 116516724

Gene position: 1286982-1285696 (Counterclockwise)

Preceding gene: 116515319

Following gene: 116515450

Centisome position: 62.9

GC content: 44.13

Gene sequence:

>1287_bases
ATGACAAAAACATTAAAACGTCCTGAGGTTTTATCACCTGCAGGGACTTTAGAGAAGCTAAAGGTAGCTGTTCAGTATGG
AGCAGATGCTGTTTTTATCGGTGGTCAGGCCTATGGTCTTCGTAGCCGTGCGGGAAACTTTACTTTCGAACAGATGGAAG
AAGGCGTGCAGTTTGCGGCCAAGTATGGTGCCAAGGTCTATGTAGCGGCTAATATGGTTATGCACGAAGGAAATGAAGCT
GGTGCTGGTGAGTGGTTCCGTAAACTGCGTGATATCGGGATTGCAGCAGTTATCGTATCTGACCCAGCCTTGATTATGAT
TGCAGCGACTGAAGCACCAGGCCTTGAAATCCACCTTTCTACCCAAGCCAGTGCCACTAACTATGAAACCCTTGAGTTCT
GGAAAGAGCTAGGCTTGACTCGTGTCGTTTTAGCGCGTGAGGTTTCAATGGAAGAATTAGCTGAGATCCGCAAACGTACA
GATGTTGAAATTGAAGCCTTTGTCCATGGAGCTATGTGTATTTCATACTCTGGACGTTGTACTCTTTCAAACCACATGAG
TATGCGTGATGCCAACCGTGGTGGATGTTCTCAGTCATGCCGTTGGAAATACGACCTTTACGATATGCCATTTGGGAAAG
AACGTAAGAGTTTGCAGGGTGAGATTCCAGAAGAATTTTCAATGTCAGCCGTTGACATGTCTATGATTGACCACATTCCA
GATATGATTGAAAATGGTGTGGACAGTCTAAAAATCGAAGGACGTATGAAGTCTATTCACTACGTATCAACAGTAACCAA
CTGCTACAAGGCGGCTGTGGATGCCTATCTTGAAAGTCCTGAAAAGTTTGAAGCTATCAAACAAGACTTGGTGGACGAGA
TGTGGAAGGTTGCCCAACGTGAATTGGCAACAGGTTTCTACTACGGTATACCATCTGAAAATGAGCAGTTGTTTGGTGCT
CGCCGTAAAATTCCTGAGTACAAGTTTGTCGCTGAAGTGGTTTCTTATGATGATGCGGTACAAACAGCAACCATTCGTCA
ACGAAACGTCATTAACGAAGGGGACCAAGTTGAGTTTTATGGTCCAGGTTTCCGTCATTTTGAAACCTATATTGAAGATT
TGCATGATGCCAAAGGCAATAAAATCGACCGCGCTCCAAATCCAATGGAACTATTGACTATTAAAGTCCCACAACCCGTT
CAATCAGGAGACATGGTTCGTGCATTAAAAGAAGGACTCATCAATTTTTATAAGGAAGATGGAACCAGCGTCACAGTTCG
AGCTTAA

Upstream 100 bases:

>100_bases
GAATTGTCAAAACAATCCGTCTAGGCTTGATTTTATCCTTTATTTACTATAAAATGAGAAGGAAAAATGTCAAACTTTTA
TATTGCAAATAGGAGAAATC

Downstream 100 bases:

>100_bases
GAAAGGAAAAGGAAATGATAGAGGCACAGGGTTTCTTAGTGGATAAGCAAACAAGATGCATTCATTACCATAGCAAGCTG
GATATTATTGCTTTACAATG

Product: peptidase, U32 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTKTLKRPEVLSPAGTLEKLKVAVQYGADAVFIGGQAYGLRSRAGNFTFEQMEEGVQFAAKYGAKVYVAANMVMHEGNEA
GAGEWFRKLRDIGIAAVIVSDPALIMIAATEAPGLEIHLSTQASATNYETLEFWKELGLTRVVLAREVSMEELAEIRKRT
DVEIEAFVHGAMCISYSGRCTLSNHMSMRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIP
DMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESPEKFEAIKQDLVDEMWKVAQRELATGFYYGIPSENEQLFGA
RRKIPEYKFVAEVVSYDDAVQTATIRQRNVINEGDQVEFYGPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPV
QSGDMVRALKEGLINFYKEDGTSVTVRA

Sequences:

>Translated_428_residues
MTKTLKRPEVLSPAGTLEKLKVAVQYGADAVFIGGQAYGLRSRAGNFTFEQMEEGVQFAAKYGAKVYVAANMVMHEGNEA
GAGEWFRKLRDIGIAAVIVSDPALIMIAATEAPGLEIHLSTQASATNYETLEFWKELGLTRVVLAREVSMEELAEIRKRT
DVEIEAFVHGAMCISYSGRCTLSNHMSMRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIP
DMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESPEKFEAIKQDLVDEMWKVAQRELATGFYYGIPSENEQLFGA
RRKIPEYKFVAEVVSYDDAVQTATIRQRNVINEGDQVEFYGPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPV
QSGDMVRALKEGLINFYKEDGTSVTVRA
>Mature_427_residues
TKTLKRPEVLSPAGTLEKLKVAVQYGADAVFIGGQAYGLRSRAGNFTFEQMEEGVQFAAKYGAKVYVAANMVMHEGNEAG
AGEWFRKLRDIGIAAVIVSDPALIMIAATEAPGLEIHLSTQASATNYETLEFWKELGLTRVVLAREVSMEELAEIRKRTD
VEIEAFVHGAMCISYSGRCTLSNHMSMRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIPD
MIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESPEKFEAIKQDLVDEMWKVAQRELATGFYYGIPSENEQLFGAR
RKIPEYKFVAEVVSYDDAVQTATIRQRNVINEGDQVEFYGPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPVQ
SGDMVRALKEGLINFYKEDGTSVTVRA

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=437, Percent_Identity=32.7231121281465, Blast_Score=214, Evalue=6e-57,
Organism=Escherichia coli, GI87081910, Length=280, Percent_Identity=37.1428571428571, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1789548, Length=309, Percent_Identity=32.0388349514563, Blast_Score=141, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 47939; Mature: 47808

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTLKRPEVLSPAGTLEKLKVAVQYGADAVFIGGQAYGLRSRAGNFTFEQMEEGVQFAA
CCCCCCCCCCCCCCCHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
KYGAKVYVAANMVMHEGNEAGAGEWFRKLRDIGIAAVIVSDPALIMIAATEAPGLEIHLS
HCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCEEEEEE
TQASATNYETLEFWKELGLTRVVLAREVSMEELAEIRKRTDVEIEAFVHGAMCISYSGRC
CCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCEEEHEEEEEEEEEECCCE
TLSNHMSMRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIP
EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
DMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESPEKFEAIKQDLVDEMWKVAQR
HHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELATGFYYGIPSENEQLFGARRKIPEYKFVAEVVSYDDAVQTATIRQRNVINEGDQVEFY
HHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEE
GPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPVQSGDMVRALKEGLINFYKED
CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
GTSVTVRA
CCEEEEEC
>Mature Secondary Structure 
TKTLKRPEVLSPAGTLEKLKVAVQYGADAVFIGGQAYGLRSRAGNFTFEQMEEGVQFAA
CCCCCCCCCCCCCCHHHHHHHHHEECCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
KYGAKVYVAANMVMHEGNEAGAGEWFRKLRDIGIAAVIVSDPALIMIAATEAPGLEIHLS
HCCCEEEEEEEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCEEEEEE
TQASATNYETLEFWKELGLTRVVLAREVSMEELAEIRKRTDVEIEAFVHGAMCISYSGRC
CCCCCCCHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHCCCEEEHEEEEEEEEEECCCE
TLSNHMSMRDANRGGCSQSCRWKYDLYDMPFGKERKSLQGEIPEEFSMSAVDMSMIDHIP
EECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHH
DMIENGVDSLKIEGRMKSIHYVSTVTNCYKAAVDAYLESPEKFEAIKQDLVDEMWKVAQR
HHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELATGFYYGIPSENEQLFGARRKIPEYKFVAEVVSYDDAVQTATIRQRNVINEGDQVEFY
HHHHHEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCEEEEE
GPGFRHFETYIEDLHDAKGNKIDRAPNPMELLTIKVPQPVQSGDMVRALKEGLINFYKED
CCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCC
GTSVTVRA
CCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]