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The map label for this gene is soxS [C]

Identifier: 116515319

GI number: 116515319

Start: 1289865

End: 1290857

Strand: Reverse

Name: soxS [C]

Synonym: SPD_1262

Alternate gene names: 116515319

Gene position: 1290857-1289865 (Counterclockwise)

Preceding gene: 116515677

Following gene: 116516724

Centisome position: 63.09

GC content: 29.1

Gene sequence:

>993_bases
ATGTCATATTATGATTTTGTAAAAGATTATATGAAAGTAGATGAATGTAAAAACAATGAGAAGTATTCAAGTGCAGGTCA
TACATTTTGTTGGAAAAAAGAGAATTCAACTTATGCAGAAGGCCTATATTGGTTTTATGAAGGAGGCAGCTTCATTATCG
ATATACATGATTTTTATATCAAAGAGGAAGTAGTTCAAAATAGCACTTATAGTATGTCAGACTATGTTTCAATTTATTCA
AGTTACATTGTCAGTGCAAACGGAGAAAAGTTTAATCCGTATCAAACTATTACCGCAAACTCTTTATGTACTTTTGATTT
TGATAATATAAAAGATGATTTTGTTTTTTTATTACACGAGAATTGTTGTTATCTTGCTGTTTCCATTGGTTTTAAAAAAG
AGCTAATAGAAAAACATTTAGCATCTATTAACATTAATCCAGAATCTTTTTATTCAACCTTGCTTCAACCGAATCAAATA
ATACTTACAAAGGCCTTAGAAAGAGTGGCAATGGAAATATTAAATTGTAAGATGGACGCTCCTGCCGCTGATTTTTTCTT
TAAAGCAAAGGCAAATGAATGGATAAGTATAGTAATTGACACATACTTAAATAGAAAAAAATATAAAATTGAAATTGATG
ATGATAAAGCACTTGAAGATGTAGCAAGATTCTTAGATGATCATTTTGCAACGAATGTAAATCAAGGCACGCTTGAAAAA
ATATCTAAAATGAGTGGTACTAAATTAAAAAATTTATTTAAGGAAAAATATTGTCAAAGCATTACAGAGTACACTCAAAG
AAAAAGAATGAATGTAGCTGAAACTCTTCTTTTAAACACTGAACTACCTATAAAAGAGATAGCAGAATCTGTTGGATATT
CATCTGCCAGCAAATTTTCTATCTATTATAAAAGATACAAGGGAAAACTTCCAAGTGAAGTCCGTAATTTAGCTTGCAAA
CATCACAATTTTAAATGCGATTATTGTGATTAA

Upstream 100 bases:

>100_bases
CTATCATTGCTTTTCTATTATACATCTGTTATAATTACTAATACAATAGTTTTGAATTAATAAGGCTAATTGGAATATTG
TCTAAAAGGGATAGTGTGTT

Downstream 100 bases:

>100_bases
AGTAATTTTTTACAAGCCATGTTTTTATATGAATTTAAGTGTATATGTGCATATATAGTCTGAATAAATTTGATTTGAAA
AATGGATAAAAAAATAAAGG

Product: transcriptional regulator, AraC family protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Chemotaxis Protein CheY

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MSYYDFVKDYMKVDECKNNEKYSSAGHTFCWKKENSTYAEGLYWFYEGGSFIIDIHDFYIKEEVVQNSTYSMSDYVSIYS
SYIVSANGEKFNPYQTITANSLCTFDFDNIKDDFVFLLHENCCYLAVSIGFKKELIEKHLASININPESFYSTLLQPNQI
ILTKALERVAMEILNCKMDAPAADFFFKAKANEWISIVIDTYLNRKKYKIEIDDDKALEDVARFLDDHFATNVNQGTLEK
ISKMSGTKLKNLFKEKYCQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACK
HHNFKCDYCD

Sequences:

>Translated_330_residues
MSYYDFVKDYMKVDECKNNEKYSSAGHTFCWKKENSTYAEGLYWFYEGGSFIIDIHDFYIKEEVVQNSTYSMSDYVSIYS
SYIVSANGEKFNPYQTITANSLCTFDFDNIKDDFVFLLHENCCYLAVSIGFKKELIEKHLASININPESFYSTLLQPNQI
ILTKALERVAMEILNCKMDAPAADFFFKAKANEWISIVIDTYLNRKKYKIEIDDDKALEDVARFLDDHFATNVNQGTLEK
ISKMSGTKLKNLFKEKYCQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACK
HHNFKCDYCD
>Mature_329_residues
SYYDFVKDYMKVDECKNNEKYSSAGHTFCWKKENSTYAEGLYWFYEGGSFIIDIHDFYIKEEVVQNSTYSMSDYVSIYSS
YIVSANGEKFNPYQTITANSLCTFDFDNIKDDFVFLLHENCCYLAVSIGFKKELIEKHLASININPESFYSTLLQPNQII
LTKALERVAMEILNCKMDAPAADFFFKAKANEWISIVIDTYLNRKKYKIEIDDDKALEDVARFLDDHFATNVNQGTLEKI
SKMSGTKLKNLFKEKYCQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFSIYYKRYKGKLPSEVRNLACKH
HNFKCDYCD

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38425; Mature: 38294

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYYDFVKDYMKVDECKNNEKYSSAGHTFCWKKENSTYAEGLYWFYEGGSFIIDIHDFYI
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHCCEEEEEECCEEEEEHHHHHH
KEEVVQNSTYSMSDYVSIYSSYIVSANGEKFNPYQTITANSLCTFDFDNIKDDFVFLLHE
HHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEEC
NCCYLAVSIGFKKELIEKHLASININPESFYSTLLQPNQIILTKALERVAMEILNCKMDA
CCEEEEEECCHHHHHHHHHHHEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
PAADFFFKAKANEWISIVIDTYLNRKKYKIEIDDDKALEDVARFLDDHFATNVNQGTLEK
CCHHHEEEECCCCHHEEHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHH
ISKMSGTKLKNLFKEKYCQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
IYYKRYKGKLPSEVRNLACKHHNFKCDYCD
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SYYDFVKDYMKVDECKNNEKYSSAGHTFCWKKENSTYAEGLYWFYEGGSFIIDIHDFYI
CHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCHHCCEEEEEECCEEEEEHHHHHH
KEEVVQNSTYSMSDYVSIYSSYIVSANGEKFNPYQTITANSLCTFDFDNIKDDFVFLLHE
HHHHHCCCCCCHHHHHHHHHHHHEECCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEEC
NCCYLAVSIGFKKELIEKHLASININPESFYSTLLQPNQIILTKALERVAMEILNCKMDA
CCEEEEEECCHHHHHHHHHHHEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
PAADFFFKAKANEWISIVIDTYLNRKKYKIEIDDDKALEDVARFLDDHFATNVNQGTLEK
CCHHHEEEECCCCHHEEHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHH
ISKMSGTKLKNLFKEKYCQSITEYTQRKRMNVAETLLLNTELPIKEIAESVGYSSASKFS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHCCCCCCHHH
IYYKRYKGKLPSEVRNLACKHHNFKCDYCD
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA