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The map label for this gene is atpH

Identifier: 116516143

GI number: 116516143

Start: 1353832

End: 1354368

Strand: Reverse

Name: atpH

Synonym: SPD_1338

Alternate gene names: 116516143

Gene position: 1354368-1353832 (Counterclockwise)

Preceding gene: 116515510

Following gene: 116517209

Centisome position: 66.19

GC content: 34.82

Gene sequence:

>537_bases
ATGGACAAGAAAACAGTAAAGGTAATTGAAAAATACAGCATGCCTTTTGTCCAATTGGTACTTGAAAAAGGAGAAGAAGA
CCGTATCTTTTCAGACTTGACTCAAATCAAGCAAGTTGTTGAAAAAACAGGTCTGCCTTCTTTTTTAAAACAAGTGGCAG
TAGACGAGTCGGATAAGGAAAAAACAATTGCTTTTTTCCAAGATTCTGTGTCACCTTTATTACAAAACTTTATCCAGGTT
CTGGCCTACAATCACAGAGCAAATCTTTTTTATGATGTGCTTGTAGATTGCTTGAACCGACTTGAAAAAGAAACAAATCG
ATTTGAAGTGACGATTACGTCTGCTCATCCTCTAACTGATGAACAGAAGACTCGTTTGCTCCCTTTGATTGAGAAAAAAA
TGTCTCTGAAAGTAAGGAGTGTAAAAGAACAAATCGATGAAAGTCTCATTGGTGGTTTTGTCATTTTTGCCAATCACAAG
ACAATTGATGTGAGTATTAAACAACAACTTAAAGTTGTTAAAGAAAATTTGAAATAG

Upstream 100 bases:

>100_bases
TGACCATCAGCTTAGCTGGTAAAATCATCTCACAAAACCTTGACAGTCATGCCCATAAAGCACTCATTGATCAGTATATC
GATCAGCTAGGAGAAGCTTA

Downstream 100 bases:

>100_bases
AAAGTGGTGTTCTTTTGGCAATTAACGCACAAGAAATCAGCGCTTTAATTAAGCAACAAATTGAAAATTTCAAACCCAAT
TTTGATGTGACTGAAACAGG

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MDKKTVKVIEKYSMPFVQLVLEKGEEDRIFSDLTQIKQVVEKTGLPSFLKQVAVDESDKEKTIAFFQDSVSPLLQNFIQV
LAYNHRANLFYDVLVDCLNRLEKETNRFEVTITSAHPLTDEQKTRLLPLIEKKMSLKVRSVKEQIDESLIGGFVIFANHK
TIDVSIKQQLKVVKENLK

Sequences:

>Translated_178_residues
MDKKTVKVIEKYSMPFVQLVLEKGEEDRIFSDLTQIKQVVEKTGLPSFLKQVAVDESDKEKTIAFFQDSVSPLLQNFIQV
LAYNHRANLFYDVLVDCLNRLEKETNRFEVTITSAHPLTDEQKTRLLPLIEKKMSLKVRSVKEQIDESLIGGFVIFANHK
TIDVSIKQQLKVVKENLK
>Mature_178_residues
MDKKTVKVIEKYSMPFVQLVLEKGEEDRIFSDLTQIKQVVEKTGLPSFLKQVAVDESDKEKTIAFFQDSVSPLLQNFIQV
LAYNHRANLFYDVLVDCLNRLEKETNRFEVTITSAHPLTDEQKTRLLPLIEKKMSLKVRSVKEQIDESLIGGFVIFANHK
TIDVSIKQQLKVVKENLK

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_STRP2 (Q04HT6)

Other databases:

- EMBL:   CP000410
- RefSeq:   YP_816800.1
- ProteinModelPortal:   Q04HT6
- STRING:   Q04HT6
- EnsemblBacteria:   EBSTRT00000019301
- GeneID:   4442505
- GenomeReviews:   CP000410_GR
- KEGG:   spd:SPD_1338
- eggNOG:   COG0712
- GeneTree:   EBGT00050000027976
- HOGENOM:   HBG697205
- OMA:   GNLIENY
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20541; Mature: 20541

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKTVKVIEKYSMPFVQLVLEKGEEDRIFSDLTQIKQVVEKTGLPSFLKQVAVDESDKE
CCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH
KTIAFFQDSVSPLLQNFIQVLAYNHRANLFYDVLVDCLNRLEKETNRFEVTITSAHPLTD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
EQKTRLLPLIEKKMSLKVRSVKEQIDESLIGGFVIFANHKTIDVSIKQQLKVVKENLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKKTVKVIEKYSMPFVQLVLEKGEEDRIFSDLTQIKQVVEKTGLPSFLKQVAVDESDKE
CCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCH
KTIAFFQDSVSPLLQNFIQVLAYNHRANLFYDVLVDCLNRLEKETNRFEVTITSAHPLTD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
EQKTRLLPLIEKKMSLKVRSVKEQIDESLIGGFVIFANHKTIDVSIKQQLKVVKENLK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA