Click here to switch to the map view.

The map label for this gene is ywnA [H]

Identifier: 116515825

GI number: 116515825

Start: 1464737

End: 1465174

Strand: Reverse

Name: ywnA [H]

Synonym: SPD_1448

Alternate gene names: 116515825

Gene position: 1465174-1464737 (Counterclockwise)

Preceding gene: 116515688

Following gene: 116516130

Centisome position: 71.61

GC content: 43.61

Gene sequence:

>438_bases
ATGCAAATTCCAAGTAGATTTACCATTGCAACTCATATGCTGATAATCATTGCCCTCGAGGGGAAGGAAAGCAAGGTGAC
CAGTGATTTTCTGGCTGCTAGTGTTGGGGTCAATCCTGTCATTATCAGAAAGATCTTGTCCCAGTTGAAGAAGGCAGAGC
TGATTTCAGTAGCGCGTGGAACGGGCGGAACAGAGATTGTCAAGGACCTTAAGGATATTAGTCTTTTAGATGTTTATCAG
GCGGTCGAATGTCTTGGTAAGACAGGTCAACTCTTCAGTTTCCATGACAATCCGAATCCAAATTGCCCTGTAGGAGCTCA
TATTCATGATGTTTTGGATCAAAAATTGGAGAGAATTCAGTTGACTATGGAGGCAGAACTTGGTCAGACCAGTCTAGAAA
AAGTCGTGGCCGATGCAGAGAGTCAGATGAAGGATTAA

Upstream 100 bases:

>100_bases
CTGGTTGAAAAGTGGTAACGATTGACATTACAACTAAAAAGGGTATAATAATAGAAAAAGAAGAGTAGAGGCAGGGTAGC
CTCGTAAAAAGGAGAAGAGG

Downstream 100 bases:

>100_bases
GAGGGATAAATGCCCTCTTTTTTTCTTTGGATAATTATGATAAAATGTAGCTATTAAAGGAGTAAGAAATGTATCTCGTT
ATAGAAATTGTATTAGCCTT

Product: Rrf2 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARGTGGTEIVKDLKDISLLDVYQ
AVECLGKTGQLFSFHDNPNPNCPVGAHIHDVLDQKLERIQLTMEAELGQTSLEKVVADAESQMKD

Sequences:

>Translated_145_residues
MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARGTGGTEIVKDLKDISLLDVYQ
AVECLGKTGQLFSFHDNPNPNCPVGAHIHDVLDQKLERIQLTMEAELGQTSLEKVVADAESQMKD
>Mature_145_residues
MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARGTGGTEIVKDLKDISLLDVYQ
AVECLGKTGQLFSFHDNPNPNCPVGAHIHDVLDQKLERIQLTMEAELGQTSLEKVVADAESQMKD

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 15825; Mature: 15825

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG
CCCCCHHHHHHHEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAHIHDVLDQKLERIQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LTMEAELGQTSLEKVVADAESQMKD
HHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELISVARG
CCCCCHHHHHHHEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
TGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAHIHDVLDQKLERIQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
LTMEAELGQTSLEKVVADAESQMKD
HHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9150240; 9384377 [H]