Click here to switch to the map view.

The map label for this gene is pdxS [H]

Identifier: 116515752

GI number: 116515752

Start: 1315899

End: 1316774

Strand: Reverse

Name: pdxS [H]

Synonym: SPD_1297

Alternate gene names: 116515752

Gene position: 1316774-1315899 (Counterclockwise)

Preceding gene: 116516669

Following gene: 116516892

Centisome position: 64.35

GC content: 44.41

Gene sequence:

>876_bases
ATGACTGAAAATCGTTATGAACTAAATAAAAACTTGGCACAGATGCTCAAGGGTGGTGTTATTATGGATGTGCAGAATCC
TGAACAGGCTCGTATCGCAGAAGCTGCTGGTGCGGCAGCTGTGATGGCCTTGGAACGAATTCCGGCTGATATTCGTGCAG
CTGGAGGAGTTTCCCGCATGAGCGACCCAAAGATGATTAAGGAAATCCAAGAAGCGGTTAGTATTCCAGTAATGGCTAAG
GTCAGAATCGGGCATTTTGTTGAAGCTCAGATTTTAGAGGCTATTGAAATTGATTATATCGACGAGAGTGAAGTTCTATC
TCCAGCTGATGACCGTTTCCATGTGGACAAGAAAGAATTCCAAGTTCCTTTTGTCTGTGGTGCTAAGGATTTGGGTGAAG
CCTTGCGTCGTATCGCTGAAGGTGCTTCCATGATTCGTACTAAAGGAGAACCAGGGACAGGGGATATAGTCCAAGCTGTT
CGTCATATGCGTATGATGAATCAGGAAATTCGCCGCATTCAAAACTTACGTGAGGACGAGCTTTATGTTGCTGCCAAGGA
TTTGCAAGTCCCTGTAGAATTGGTCCAATATGTTCATGAACATGGAAAATTGCCAGTTGTAAATTTCGCTGCTGGAGGTG
TTGCAACGCCAGCAGATGCTGCGTTAATGATGCAATTAGGGGCAGAGGGGGTCTTTGTCGGTTCAGGTATTTTCAAGTCA
GGAGATCCTGTTAAACGAGCGAGTGCCATTGTTAAGGCTGTGACTAACTTCCGTAATCCTCAAATCCTAGCTCAAATCTC
TGAAGATTTAGGAGAAGCCATGGTTGGTATTAATGAAAATGAAATCCAAATTCTCATGGCTGAACGAGGAAAATAG

Upstream 100 bases:

>100_bases
TCTGTCCCCATACAATTATAGTTTTTTTATCTTGTGCTTCATTCTGTTCTGACTTAAAATGAAAAGGTAGCTACCAATAC
AAATGATGAGGATAAAACAA

Downstream 100 bases:

>100_bases
ATGAAAATCGGAATATTGGCCTTGCAAGGGGCCTTTGCAGAACATGCAAAAGTGCTAGATCAATTAGGTGTCGAGAGTGT
AGAACTCAGAAATCTAGATG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MTENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAK
VRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAV
RHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKS
GDPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGINENEIQILMAERGK

Sequences:

>Translated_291_residues
MTENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAK
VRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAV
RHMRMMNQEIRRIQNLREDELYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKS
GDPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGINENEIQILMAERGK
>Mature_290_residues
TENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRMSDPKMIKEIQEAVSIPVMAKV
RIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEFQVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVR
HMRMMNQEIRRIQNLREDELYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKSG
DPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGINENEIQILMAERGK

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=279, Percent_Identity=66.6666666666667, Blast_Score=386, Evalue=1e-108,
Organism=Saccharomyces cerevisiae, GI6323996, Length=282, Percent_Identity=67.0212765957447, Blast_Score=375, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6321049, Length=282, Percent_Identity=66.6666666666667, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31741; Mature: 31610

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRM
CCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
SDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEF
CCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHC
QVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDE
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKS
EEEEHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGINENEIQILMAERGK
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
>Mature Secondary Structure 
TENRYELNKNLAQMLKGGVIMDVQNPEQARIAEAAGAAAVMALERIPADIRAAGGVSRM
CCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
SDPKMIKEIQEAVSIPVMAKVRIGHFVEAQILEAIEIDYIDESEVLSPADDRFHVDKKEF
CCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHC
QVPFVCGAKDLGEALRRIAEGASMIRTKGEPGTGDIVQAVRHMRMMNQEIRRIQNLREDE
CCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKS
EEEEHHCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGINENEIQILMAERGK
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA