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The map label for this gene is ybdH [H]

Identifier: 116496314

GI number: 116496314

Start: 2883794

End: 2884879

Strand: Direct

Name: ybdH [H]

Synonym: LSEI_2898

Alternate gene names: 116496314

Gene position: 2883794-2884879 (Clockwise)

Preceding gene: 116496311

Following gene: 116496321

Centisome position: 99.6

GC content: 48.53

Gene sequence:

>1086_bases
ATGAAGTTAGATTTGGAACTACGCCCTGGGGCAAATCGTTTTGTGAGTGAGTCAGGTGCCTTGGCATACTTAGATACGAT
CTTAGCGGATTTTAATCAACCAGTTGTGATTACCGGCGAAAAAAGTTTTGCTGCTTTCACCAAGGCTTATCCCGGCGAAC
TGAACTTGCCAGTCTATCATTACGACGGCTCCGCCAGTGATGAGAATGGACACGAACTTGCACAGGAAATCGGTCATGCT
GATGCCGTGGTAGGAATCGGTGCTGGTCGCTTGATCGATACCGCCAAAGTTGCGGCCGAAGCCTTGGGTGCTGAGCTCAT
CAGCATCCCCACCTTGGCCTCTAACTGTGCGCCATTCACACCGCTTGCTGCGATTTATCATCCGCAAGGTCATACCTTTA
GTTACGTTGAATATTTTAAAAAATCTGCCTATATTACTTTGGTAGACTATAACCTCTTATTGTCCACCCCACATGATTTC
TTTGTTGCTGGGATTGGCGATACCTTGGCCAAATGGTACGAGATGGACGGCATTACCCGTGATAAAGTGGATCAGTTAAA
GGCATACGGCCAGTTGAGTCGTGCCGCGGCCAAAACGATTCAAAAGATTCTCTTTAAAGATGCTGAACAGGCCTTGGCCG
ATTTGGATGCCGGCCGCGACACCCCGGCTTTTGAGGCGGTTGCCGATACCATTATCGGCTTGGCTGGTGAAGTCGGTGGC
TTCGGCGGCATTGATGGTCGCGCTGCCGGTGCTCACGCCACTCACAATGGCCTGTCCTACTTACCAGAAACCCATGCCAT
CTTGCACGGTTCAAAAGTGGCTTACGGCATTCTGGTGCAACTGGCTGAAACCGGAGATGATAGCGAAATTCGCAACTTGA
TTCCATTCTATGAAAAAATCAGTTTGCCATTGAACCTTGAAGATTTGCATGTCACCGATCAAGTCGATGAAAAGATTAAG
CAAGTGGCCGAATTTGCCGCTAAACCAGATGAAACCTTCATCTTGGTTGATCCAACTTTAACCCCTGCCAAAGTAGCAGA
TGCGATGACAAAAGTGGAACAAGTCACTAGTGAGCCAGCAGCTTAA

Upstream 100 bases:

>100_bases
TTTGCAGATTGTTTTCATTTTCTAGTTGACTTCATACTGAACATCGCGTATGTTAAAAATTATCACATAAGATGAGATTT
ACATGAGAGGATTTTTGTCG

Downstream 100 bases:

>100_bases
AGTCCGAAATCGGACAATCTAATGAATACTGTTTCACAAGAATTTTAAAAAACCTTGCAGCCCTCTTAAAATGGTTGCAA
GGTTTTTTCGTTTTTGTATT

Product: glycerol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MKLDLELRPGANRFVSESGALAYLDTILADFNQPVVITGEKSFAAFTKAYPGELNLPVYHYDGSASDENGHELAQEIGHA
DAVVGIGAGRLIDTAKVAAEALGAELISIPTLASNCAPFTPLAAIYHPQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDF
FVAGIGDTLAKWYEMDGITRDKVDQLKAYGQLSRAAAKTIQKILFKDAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG
FGGIDGRAAGAHATHNGLSYLPETHAILHGSKVAYGILVQLAETGDDSEIRNLIPFYEKISLPLNLEDLHVTDQVDEKIK
QVAEFAAKPDETFILVDPTLTPAKVADAMTKVEQVTSEPAA

Sequences:

>Translated_361_residues
MKLDLELRPGANRFVSESGALAYLDTILADFNQPVVITGEKSFAAFTKAYPGELNLPVYHYDGSASDENGHELAQEIGHA
DAVVGIGAGRLIDTAKVAAEALGAELISIPTLASNCAPFTPLAAIYHPQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDF
FVAGIGDTLAKWYEMDGITRDKVDQLKAYGQLSRAAAKTIQKILFKDAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG
FGGIDGRAAGAHATHNGLSYLPETHAILHGSKVAYGILVQLAETGDDSEIRNLIPFYEKISLPLNLEDLHVTDQVDEKIK
QVAEFAAKPDETFILVDPTLTPAKVADAMTKVEQVTSEPAA
>Mature_361_residues
MKLDLELRPGANRFVSESGALAYLDTILADFNQPVVITGEKSFAAFTKAYPGELNLPVYHYDGSASDENGHELAQEIGHA
DAVVGIGAGRLIDTAKVAAEALGAELISIPTLASNCAPFTPLAAIYHPQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDF
FVAGIGDTLAKWYEMDGITRDKVDQLKAYGQLSRAAAKTIQKILFKDAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG
FGGIDGRAAGAHATHNGLSYLPETHAILHGSKVAYGILVQLAETGDDSEIRNLIPFYEKISLPLNLEDLHVTDQVDEKIK
QVAEFAAKPDETFILVDPTLTPAKVADAMTKVEQVTSEPAA

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=350, Percent_Identity=36.8571428571429, Blast_Score=191, Evalue=9e-50,
Organism=Escherichia coli, GI87082352, Length=359, Percent_Identity=30.6406685236769, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 38649; Mature: 38649

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDLELRPGANRFVSESGALAYLDTILADFNQPVVITGEKSFAAFTKAYPGELNLPVYH
CEEEEEECCCCCHHHCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCEEEE
YDGSASDENGHELAQEIGHADAVVGIGAGRLIDTAKVAAEALGAELISIPTLASNCAPFT
ECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
PLAAIYHPQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDFFVAGIGDTLAKWYEMDGITR
CHHHEECCCCCCHHHHHHHHCCCEEEEEEEEEEEECCCHHEEECHHHHHHHHHHHCCCCH
DKVDQLKAYGQLSRAAAKTIQKILFKDAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
FGGIDGRAAGAHATHNGLSYLPETHAILHGSKVAYGILVQLAETGDDSEIRNLIPFYEKI
CCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SLPLNLEDLHVTDQVDEKIKQVAEFAAKPDETFILVDPTLTPAKVADAMTKVEQVTSEPA
CCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure
MKLDLELRPGANRFVSESGALAYLDTILADFNQPVVITGEKSFAAFTKAYPGELNLPVYH
CEEEEEECCCCCHHHCCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCCCCCCEEEE
YDGSASDENGHELAQEIGHADAVVGIGAGRLIDTAKVAAEALGAELISIPTLASNCAPFT
ECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
PLAAIYHPQGHTFSYVEYFKKSAYITLVDYNLLLSTPHDFFVAGIGDTLAKWYEMDGITR
CHHHEECCCCCCHHHHHHHHCCCEEEEEEEEEEEECCCHHEEECHHHHHHHHHHHCCCCH
DKVDQLKAYGQLSRAAAKTIQKILFKDAEQALADLDAGRDTPAFEAVADTIIGLAGEVGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
FGGIDGRAAGAHATHNGLSYLPETHAILHGSKVAYGILVQLAETGDDSEIRNLIPFYEKI
CCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SLPLNLEDLHVTDQVDEKIKQVAEFAAKPDETFILVDPTLTPAKVADAMTKVEQVTSEPA
CCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]