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The map label for this gene is ykrA [H]

Identifier: 116496306

GI number: 116496306

Start: 2872566

End: 2873351

Strand: Direct

Name: ykrA [H]

Synonym: LSEI_2890

Alternate gene names: 116496306

Gene position: 2872566-2873351 (Clockwise)

Preceding gene: 116496305

Following gene: 116496307

Centisome position: 99.22

GC content: 46.95

Gene sequence:

>786_bases
ATGTACAAAGCTGTCGTTTTTTTTGATTTAGATCAAACGCTGCTCAATGATGACAAACAGGTGCCACCCGAAAATGTTGC
TGCGCTCAAAGCCCTTGAAGCCAACCAGATTCTGCCGGTCATTGCGACTGGCAGAAATTACTACGAACTGGCTGACATTA
TGGCAGCAACTGGGGTCCGCAGTGCAATTGCTGCTAATGGTGGTGACATTTTTCTTGACGGCGATCACATTTTTCAAAGT
GTGATTGGCGAGCCGCAACTCACCCGTTTTCTCAATACGAGTGCAGCACAAGACATTCAAGTTGCCATGTACAACAGTGA
AGCATCGGCGCTGACCGGCCATAATCAGCTCACAACCGATAACTATGCGCAGGTGCGGCAAACACCGCCGCCGGTCAAGC
CATCTTTCTACGAGCATGAAGCAATCTGTATGATGTTAATGTTTGTACCATGGACCGATGCAGGTGACCAGATTGGGAAA
CAATTCATCCAAGATTTCCCAGAAATGACGTTCTACCGCAACTCGCATTATACGTTTGATGTTGTCAATCATGGCATTTC
CAAAGGCAGTGGCATGGCCATCCTGTTAAATCAGCCATCCTTACGTGGTCTGCCAACCTACGCATTTGGCGACGGTTATA
ATGACATTCCGTTGTTGCAAGCAGCTGACACCGGAATTGCGATGGGGAACGCTTATCCAAAAGTTGCGGCTGTTGCGGAT
TATCAAACGGACGATTATCGCGAAAACGGTATTCCAAATGCACTTGCACATTTTAACTTGATTTAA

Upstream 100 bases:

>100_bases
GTATCCGTCTTTTCCTGTAAGCGTTTCGATTTCTTGCCCTCTGCCGTACGTATTCCATGGTAGAATGAGGCCATCACAAC
ATTTAGTAACGGAGGAAATT

Downstream 100 bases:

>100_bases
TTTTTAATGCGTAAAAACACATCAATATTAGCCTATTGGTGTGCTTTTTTTATGGCGCTTATCCAGCAGCATTTTCCGCT
AAATTTCGGTTGACTTTGCA

Product: HAD superfamily hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MYKAVVFFDLDQTLLNDDKQVPPENVAALKALEANQILPVIATGRNYYELADIMAATGVRSAIAANGGDIFLDGDHIFQS
VIGEPQLTRFLNTSAAQDIQVAMYNSEASALTGHNQLTTDNYAQVRQTPPPVKPSFYEHEAICMMLMFVPWTDAGDQIGK
QFIQDFPEMTFYRNSHYTFDVVNHGISKGSGMAILLNQPSLRGLPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD
YQTDDYRENGIPNALAHFNLI

Sequences:

>Translated_261_residues
MYKAVVFFDLDQTLLNDDKQVPPENVAALKALEANQILPVIATGRNYYELADIMAATGVRSAIAANGGDIFLDGDHIFQS
VIGEPQLTRFLNTSAAQDIQVAMYNSEASALTGHNQLTTDNYAQVRQTPPPVKPSFYEHEAICMMLMFVPWTDAGDQIGK
QFIQDFPEMTFYRNSHYTFDVVNHGISKGSGMAILLNQPSLRGLPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD
YQTDDYRENGIPNALAHFNLI
>Mature_261_residues
MYKAVVFFDLDQTLLNDDKQVPPENVAALKALEANQILPVIATGRNYYELADIMAATGVRSAIAANGGDIFLDGDHIFQS
VIGEPQLTRFLNTSAAQDIQVAMYNSEASALTGHNQLTTDNYAQVRQTPPPVKPSFYEHEAICMMLMFVPWTDAGDQIGK
QFIQDFPEMTFYRNSHYTFDVVNHGISKGSGMAILLNQPSLRGLPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD
YQTDDYRENGIPNALAHFNLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI1786982, Length=272, Percent_Identity=29.7794117647059, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 28652; Mature: 28652

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00761 SPASE_I_3 ; PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKAVVFFDLDQTLLNDDKQVPPENVAALKALEANQILPVIATGRNYYELADIMAATGVR
CCEEEEEEECCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
SAIAANGGDIFLDGDHIFQSVIGEPQLTRFLNTSAAQDIQVAMYNSEASALTGHNQLTTD
HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCCC
NYAQVRQTPPPVKPSFYEHEAICMMLMFVPWTDAGDQIGKQFIQDFPEMTFYRNSHYTFD
CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHEEEECCCEEEE
VVNHGISKGSGMAILLNQPSLRGLPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD
HHHCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCEEEECCCCEEECCCCCCEEEEEC
YQTDDYRENGIPNALAHFNLI
CCCCCHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MYKAVVFFDLDQTLLNDDKQVPPENVAALKALEANQILPVIATGRNYYELADIMAATGVR
CCEEEEEEECCHHHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
SAIAANGGDIFLDGDHIFQSVIGEPQLTRFLNTSAAQDIQVAMYNSEASALTGHNQLTTD
HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCCCCC
NYAQVRQTPPPVKPSFYEHEAICMMLMFVPWTDAGDQIGKQFIQDFPEMTFYRNSHYTFD
CHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHEEEECCCEEEE
VVNHGISKGSGMAILLNQPSLRGLPTYAFGDGYNDIPLLQAADTGIAMGNAYPKVAAVAD
HHHCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCEEEECCCCEEECCCCCCEEEEEC
YQTDDYRENGIPNALAHFNLI
CCCCCHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]