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The map label for this gene is ycaC [H]

Identifier: 116496243

GI number: 116496243

Start: 2804357

End: 2804980

Strand: Direct

Name: ycaC [H]

Synonym: LSEI_2822

Alternate gene names: 116496243

Gene position: 2804357-2804980 (Clockwise)

Preceding gene: 116496242

Following gene: 116496244

Centisome position: 96.86

GC content: 46.96

Gene sequence:

>624_bases
ATGACAAATTTTCCACACCGTGACCCGGTTACTGACCGGCTGCTCACCCCGGAAAATTCTGCTTTGATTCTGATTGACTA
CCAACCGACACAAATTGAATCCATCGGTTCCATGAACCATCACGCTTTGAACCAAAATGTTGTGATGACGGCCAAGTTGG
CTAAAACGTACAATGTGCCAATTGTTCTCTCTACTGTTAACGTTAAAAGCGGACGCAATAAAGACACCATCCCCGATTTA
AAAAAAGCCCTCGGCGATATACCAAGTATTGATCGCTCTTCGATTAATGCTTGGCAAGATAAAGAGTTTGTCGAAGCAGT
CAAAGCAACTGGCCGTAAGAACTTGGTTATCGCGGCCTTATGGACAGAAGCCTGCCTAACCTTCCCAACAATTGATGCTT
TGGCTGAAGGCTATCATGTTTATCCTGTCGTGGATGCTGTTGGCGGCACCTCACAAATTGCTCACGAAACTGCTTTACGC
CGCGTTGAACAAGTAGGTGCACAATTGACCACAAATGCCCAACTGGCTTGCGAATGGCAGCGCGACTGGAACCGAACCGA
CACTGTACCGGATTTTGTTAAACTGCTGCTGGGTGCAGGCGACTTTATCAATTTAGGCGACTAG

Upstream 100 bases:

>100_bases
CCTGCTCGCAATGGTCAAAGTAAGACCATCACGAACAGGCCCACTTACACTCCGGTTGCTAACCGTGCTGACTCACGCTC
ACTAAAAGGAGTGATTTTTG

Downstream 100 bases:

>100_bases
CTTTTTAACAATATGACATGAACGGGGCTGATTAAAGCAGCCCCGTTTCGTTTCTTATCGCTTATGATGTGTACCTGCCC
ATGACATCGCATGATGCCAT

Product: amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTNFPHRDPVTDRLLTPENSALILIDYQPTQIESIGSMNHHALNQNVVMTAKLAKTYNVPIVLSTVNVKSGRNKDTIPDL
KKALGDIPSIDRSSINAWQDKEFVEAVKATGRKNLVIAALWTEACLTFPTIDALAEGYHVYPVVDAVGGTSQIAHETALR
RVEQVGAQLTTNAQLACEWQRDWNRTDTVPDFVKLLLGAGDFINLGD

Sequences:

>Translated_207_residues
MTNFPHRDPVTDRLLTPENSALILIDYQPTQIESIGSMNHHALNQNVVMTAKLAKTYNVPIVLSTVNVKSGRNKDTIPDL
KKALGDIPSIDRSSINAWQDKEFVEAVKATGRKNLVIAALWTEACLTFPTIDALAEGYHVYPVVDAVGGTSQIAHETALR
RVEQVGAQLTTNAQLACEWQRDWNRTDTVPDFVKLLLGAGDFINLGD
>Mature_206_residues
TNFPHRDPVTDRLLTPENSALILIDYQPTQIESIGSMNHHALNQNVVMTAKLAKTYNVPIVLSTVNVKSGRNKDTIPDLK
KALGDIPSIDRSSINAWQDKEFVEAVKATGRKNLVIAALWTEACLTFPTIDALAEGYHVYPVVDAVGGTSQIAHETALRR
VEQVGAQLTTNAQLACEWQRDWNRTDTVPDFVKLLLGAGDFINLGD

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787124, Length=192, Percent_Identity=36.4583333333333, Blast_Score=133, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 22792; Mature: 22661

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNFPHRDPVTDRLLTPENSALILIDYQPTQIESIGSMNHHALNQNVVMTAKLAKTYNVP
CCCCCCCCCCCCCEECCCCCEEEEEECCCCHHHHHCCCCCHHCCCCEEEEEEHHHHCCCC
IVLSTVNVKSGRNKDTIPDLKKALGDIPSIDRSSINAWQDKEFVEAVKATGRKNLVIAAL
EEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
WTEACLTFPTIDALAEGYHVYPVVDAVGGTSQIAHETALRRVEQVGAQLTTNAQLACEWQ
HHHHHHHCCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RDWNRTDTVPDFVKLLLGAGDFINLGD
CCCCCCCCHHHHHHHHHCCCCEEECCC
>Mature Secondary Structure 
TNFPHRDPVTDRLLTPENSALILIDYQPTQIESIGSMNHHALNQNVVMTAKLAKTYNVP
CCCCCCCCCCCCEECCCCCEEEEEECCCCHHHHHCCCCCHHCCCCEEEEEEHHHHCCCC
IVLSTVNVKSGRNKDTIPDLKKALGDIPSIDRSSINAWQDKEFVEAVKATGRKNLVIAAL
EEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
WTEACLTFPTIDALAEGYHVYPVVDAVGGTSQIAHETALRRVEQVGAQLTTNAQLACEWQ
HHHHHHHCCCHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
RDWNRTDTVPDFVKLLLGAGDFINLGD
CCCCCCCCHHHHHHHHHCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 9782055 [H]