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The map label for this gene is ydcR [C]

Identifier: 116496075

GI number: 116496075

Start: 2632012

End: 2633214

Strand: Direct

Name: ydcR [C]

Synonym: LSEI_2648

Alternate gene names: 116496075

Gene position: 2632012-2633214 (Clockwise)

Preceding gene: 116496073

Following gene: 116496077

Centisome position: 90.91

GC content: 47.38

Gene sequence:

>1203_bases
ATGAAATTCGCAACACGTACTCAAAAAACTGGTCATTCAGGTTTAGAAGATCTATTTGCTGCTTCTGGTCCAAATGTCAT
TTCATTTGCCGGTGGTTATCCAGATCGCGATTTATTCCCGACAAAACAACTTAATCAGGCATTTAGTCAAAACTTTACAA
GTGGCGATAGGGAATTGCTTCAATATGCCAGCACAGAAGGTTACGAACCATTACGTGCCAAGATTGCAGCTCGTCTGCAG
ACGACTGGGATGCAGGTCGACGCCGATGACATCATGATGACCCAAGGCGCTCAACAAGGCATTGATCTAGTGGCACGGTT
AATGTTGGATCCAGGCGACGGTTTGGTTGTTGAAGCCCCAACTTACTTAGGTGCACTTGCTGCTTTTAACGCCTATCAAC
CCACCTATTACGAAGTACCGATGCAAGCTGATGGCATGGACATCAATGCTTTACAACGCATTCTAATGAGTCGCAAAGTC
AAGTTCATCTACACCGTTCCTGATTTTCAAAATCCTACTGGGGTTGTGATGTCCTTGGCCAAGCGGCAGGCAATCATTCG
CCTCGCCAACCAGTATGATGTCATGATTTTGGAAGATAATCCGTATCGCGACCTTCGTTATACTGGCAAAGCCTTGCCGA
CGATCAAGTCACTCGACACAGAAGGACGCGTTATCTATCTTGGCAGTTTTAGTAAAATCCTTTCTCCAAGCCTGCGCATG
GGCTGGTTGGTCGCTGCGCCCAATCTTTTAAAAGAGTTGCTGGCCTTAAAAGGCGGCAGTGATCTGGAATCCAGCAATCT
GGTAATGCACGGGATCAATACCTATATGGAAAATAACGATCTTGATGCACATATCAGGGAAATTCAGGATTGCTATCGTG
AGAAAAAGAATGCCATGGTGGCGGCGATGAAGCGCTATCTGCCAGAAGAAGCGCACTTCACTAATCCTGACGGCGGCTTC
TTTATCTGGCTCACCATGCCAGCCGGCTTCGATATGGGCGCGTTCATGAAAGAACACCTATTACCGGAAGCCAATATCTC
CTATGTGCCATCAACCAATCTATATGCGACAGCGGCTTTGTCCAACGGCGCCCGGTTGAACTTCACTGGTCCTAGTCTGG
CGCAAATTGATACCGGCATGAAAGCTTTGGGTGCAGCATTAAAGGTTGCTCTGCAACACAATCTGGTTGCCGAACAAGCC
TAG

Upstream 100 bases:

>100_bases
CACTAGTGTCAATAAGAAAACGTTGGTACTTCACCAAAGCATCAACGTCATAAAGACGTCGGCACCCGTTTTAATCGCAA
ACGTCAAAGGGGGATTCATC

Downstream 100 bases:

>100_bases
GCTATAACGCGTTCAAAAAAACTCGGTTAACCTTAACAAAATGACAACGTAACGATCACATTTTCGTCACACTTTGCCGG
TAGTATTAACAGCATAGAAG

Product: aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MKFATRTQKTGHSGLEDLFAASGPNVISFAGGYPDRDLFPTKQLNQAFSQNFTSGDRELLQYASTEGYEPLRAKIAARLQ
TTGMQVDADDIMMTQGAQQGIDLVARLMLDPGDGLVVEAPTYLGALAAFNAYQPTYYEVPMQADGMDINALQRILMSRKV
KFIYTVPDFQNPTGVVMSLAKRQAIIRLANQYDVMILEDNPYRDLRYTGKALPTIKSLDTEGRVIYLGSFSKILSPSLRM
GWLVAAPNLLKELLALKGGSDLESSNLVMHGINTYMENNDLDAHIREIQDCYREKKNAMVAAMKRYLPEEAHFTNPDGGF
FIWLTMPAGFDMGAFMKEHLLPEANISYVPSTNLYATAALSNGARLNFTGPSLAQIDTGMKALGAALKVALQHNLVAEQA

Sequences:

>Translated_400_residues
MKFATRTQKTGHSGLEDLFAASGPNVISFAGGYPDRDLFPTKQLNQAFSQNFTSGDRELLQYASTEGYEPLRAKIAARLQ
TTGMQVDADDIMMTQGAQQGIDLVARLMLDPGDGLVVEAPTYLGALAAFNAYQPTYYEVPMQADGMDINALQRILMSRKV
KFIYTVPDFQNPTGVVMSLAKRQAIIRLANQYDVMILEDNPYRDLRYTGKALPTIKSLDTEGRVIYLGSFSKILSPSLRM
GWLVAAPNLLKELLALKGGSDLESSNLVMHGINTYMENNDLDAHIREIQDCYREKKNAMVAAMKRYLPEEAHFTNPDGGF
FIWLTMPAGFDMGAFMKEHLLPEANISYVPSTNLYATAALSNGARLNFTGPSLAQIDTGMKALGAALKVALQHNLVAEQA
>Mature_400_residues
MKFATRTQKTGHSGLEDLFAASGPNVISFAGGYPDRDLFPTKQLNQAFSQNFTSGDRELLQYASTEGYEPLRAKIAARLQ
TTGMQVDADDIMMTQGAQQGIDLVARLMLDPGDGLVVEAPTYLGALAAFNAYQPTYYEVPMQADGMDINALQRILMSRKV
KFIYTVPDFQNPTGVVMSLAKRQAIIRLANQYDVMILEDNPYRDLRYTGKALPTIKSLDTEGRVIYLGSFSKILSPSLRM
GWLVAAPNLLKELLALKGGSDLESSNLVMHGINTYMENNDLDAHIREIQDCYREKKNAMVAAMKRYLPEEAHFTNPDGGF
FIWLTMPAGFDMGAFMKEHLLPEANISYVPSTNLYATAALSNGARLNFTGPSLAQIDTGMKALGAALKVALQHNLVAEQA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=406, Percent_Identity=26.8472906403941, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI33469970, Length=406, Percent_Identity=26.8472906403941, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI4507369, Length=206, Percent_Identity=25.7281553398058, Blast_Score=72, Evalue=8e-13,
Organism=Escherichia coli, GI1787710, Length=318, Percent_Identity=32.3899371069182, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1790797, Length=379, Percent_Identity=27.7044854881267, Blast_Score=162, Evalue=4e-41,
Organism=Escherichia coli, GI1788722, Length=344, Percent_Identity=23.8372093023256, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=327, Percent_Identity=28.7461773700306, Blast_Score=119, Evalue=9e-28,
Organism=Saccharomyces cerevisiae, GI6321929, Length=319, Percent_Identity=25.0783699059561, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6321000, Length=443, Percent_Identity=23.0248306997743, Blast_Score=87, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21356535, Length=406, Percent_Identity=27.3399014778325, Blast_Score=132, Evalue=4e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 44047; Mature: 44047

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFATRTQKTGHSGLEDLFAASGPNVISFAGGYPDRDLFPTKQLNQAFSQNFTSGDRELL
CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
QYASTEGYEPLRAKIAARLQTTGMQVDADDIMMTQGAQQGIDLVARLMLDPGDGLVVEAP
HHHCCCCCCHHHHHHHHHHHHCCCEECHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECH
TYLGALAAFNAYQPTYYEVPMQADGMDINALQRILMSRKVKFIYTVPDFQNPTGVVMSLA
HHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH
KRQAIIRLANQYDVMILEDNPYRDLRYTGKALPTIKSLDTEGRVIYLGSFSKILSPSLRM
HHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCHHHCCCCCCCEEEEECCHHHHCCCHHH
GWLVAAPNLLKELLALKGGSDLESSNLVMHGINTYMENNDLDAHIREIQDCYREKKNAMV
CEEEECHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AAMKRYLPEEAHFTNPDGGFFIWLTMPAGFDMGAFMKEHLLPEANISYVPSTNLYATAAL
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCEEEEEE
SNGARLNFTGPSLAQIDTGMKALGAALKVALQHNLVAEQA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFATRTQKTGHSGLEDLFAASGPNVISFAGGYPDRDLFPTKQLNQAFSQNFTSGDRELL
CCCCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
QYASTEGYEPLRAKIAARLQTTGMQVDADDIMMTQGAQQGIDLVARLMLDPGDGLVVEAP
HHHCCCCCCHHHHHHHHHHHHCCCEECHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECH
TYLGALAAFNAYQPTYYEVPMQADGMDINALQRILMSRKVKFIYTVPDFQNPTGVVMSLA
HHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHH
KRQAIIRLANQYDVMILEDNPYRDLRYTGKALPTIKSLDTEGRVIYLGSFSKILSPSLRM
HHHHHHHHHCCCCEEEECCCCCCCHHCCCCCCCHHHCCCCCCCEEEEECCHHHHCCCHHH
GWLVAAPNLLKELLALKGGSDLESSNLVMHGINTYMENNDLDAHIREIQDCYREKKNAMV
CEEEECHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AAMKRYLPEEAHFTNPDGGFFIWLTMPAGFDMGAFMKEHLLPEANISYVPSTNLYATAAL
HHHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCEEEEEE
SNGARLNFTGPSLAQIDTGMKALGAALKVALQHNLVAEQA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]