| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is psiE [H]
Identifier: 116495949
GI number: 116495949
Start: 2472256
End: 2472693
Strand: Direct
Name: psiE [H]
Synonym: LSEI_2505
Alternate gene names: 116495949
Gene position: 2472256-2472693 (Clockwise)
Preceding gene: 116495912
Following gene: 116495958
Centisome position: 85.39
GC content: 41.78
Gene sequence:
>438_bases ATGAAATTTGACCATTACAAAAAGCTCGTCAACTCAACTTTAGATATTCTACTCGGTTTTTTAGCCATTGTCGTGGTAAT TTTTATGCTACGCTACATTCTCGATATCGGTAGTCTGATCCTTCAACCACTTTCGACTGCTTTGTTTGGCAAAGTCATTC AGGAAGTTACCAGCTTCTTCATGCTCTTTGAATTTGTGATCATGCTGGTTCGCTACATTGAGGAAGGTCATCACATTCCT ATCCGCTACCTTATTTTAATTTCAATGACCGCCATCTTACGCCAACTGCTCGTGCTGCATGACCGCGGGACTGAAACCCT GCTTTTAACCTTGGCCATTTTGGTATTAGCCGGTGTACTCACGGTGTTTTCGTTTGTCAGTGGCGATTTCAAACAGTCGC AGGATGGTAAAAACGTTGATATTGACCAACACTTTTAA
Upstream 100 bases:
>100_bases ATATGTTAGAAGCAAACTTATTCCTTTGAACAGCTGCTTGTGCTAAATTCAAATTAAAGCCTTAACTTTTGAATAACCAT AGAAAGAAGGGAGGCAGTTG
Downstream 100 bases:
>100_bases CTTTGTTTTTTCTCGTTTCTTCTATATTACTTTATACACGCAAAAAAGGAACCGCAGCGAAAATCATTGCGGTTCCTTTT TTGCGTGCGTCGCTGATTAG
Product: phosphate-starvation-inducible protein PsiE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 145
Protein sequence:
>145_residues MKFDHYKKLVNSTLDILLGFLAIVVVIFMLRYILDIGSLILQPLSTALFGKVIQEVTSFFMLFEFVIMLVRYIEEGHHIP IRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVLTVFSFVSGDFKQSQDGKNVDIDQHF
Sequences:
>Translated_145_residues MKFDHYKKLVNSTLDILLGFLAIVVVIFMLRYILDIGSLILQPLSTALFGKVIQEVTSFFMLFEFVIMLVRYIEEGHHIP IRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVLTVFSFVSGDFKQSQDGKNVDIDQHF >Mature_145_residues MKFDHYKKLVNSTLDILLGFLAIVVVIFMLRYILDIGSLILQPLSTALFGKVIQEVTSFFMLFEFVIMLVRYIEEGHHIP IRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVLTVFSFVSGDFKQSQDGKNVDIDQHF
Specific function: Unknown
COG id: COG3223
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the psiE family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009315 - InterPro: IPR020948 [H]
Pfam domain/function: PF06146 PsiE [H]
EC number: NA
Molecular weight: Translated: 16544; Mature: 16544
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFDHYKKLVNSTLDILLGFLAIVVVIFMLRYILDIGSLILQPLSTALFGKVIQEVTSFF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFEFVIMLVRYIEEGHHIPIRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TVFSFVSGDFKQSQDGKNVDIDQHF HHHHHHHCHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKFDHYKKLVNSTLDILLGFLAIVVVIFMLRYILDIGSLILQPLSTALFGKVIQEVTSFF CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLFEFVIMLVRYIEEGHHIPIRYLILISMTAILRQLLVLHDRGTETLLLTLAILVLAGVL HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH TVFSFVSGDFKQSQDGKNVDIDQHF HHHHHHHCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA