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The map label for this gene is skgA [H]

Identifier: 116495912

GI number: 116495912

Start: 2451329

End: 2452090

Strand: Direct

Name: skgA [H]

Synonym: LSEI_2468

Alternate gene names: 116495912

Gene position: 2451329-2452090 (Clockwise)

Preceding gene: 116495911

Following gene: 116495949

Centisome position: 84.67

GC content: 45.67

Gene sequence:

>762_bases
ATGACCTATTCTACAAAGCAACTAGCCGATTTGGCTGGTGTGACACCACGAACATTGCGCTACTATGACAAGATTGGCTT
GCTGAAAACGCAACGTGATCCTGATAATCAGTATCGCGTTTATACTCAGGCTGAGGTTGATCGTCTGCAAACCATCCGCT
TCTTACAATTATTTGAGATGCCGCTTGCCCAAGTGAAGGTGCTGCTAGACGGTCCTGCTGAAAACTTAACCGCCGCTCTC
AAGCAACAACGCAAACGCATCACTGCGAAACGCGATCAACTAAGCTTACTGCTCACTACCCTTGATCAAACTTTAGAAAA
AGGAGTCGATACAATGACTGATGACGAAAAATTTGCCGCTTTTAAAGATCAATCCATCAAAGCAAACGAACAACAATATG
GTGAAGAAATCCGGCAACAATATGGAGATGATATTGTCGAAGCCAGCAACAAAAAGTTCCGCGATATGTCACAGGCGCAG
GTCGCCCAACTAACCGCCCTACAACAGGAAATTTTAGATGCCTTAAAGCCGTTAGTTGGCACCACCGATTTCAATACCCC
GGAGGCCAAACGCGTCTTCAAATTGCACAAGCAATTTCTACAAATGACCTGGCCTTCTGAACAATATTCACAAAAAGCTC
ATCGCGGTTTAGCTGCTATGTATGTTTCCGATCCACGTTTTAGCAAGTATTACGAAGACGGCACCGGCAAAGCCGGAGCG
GCTGAAACGTTAAATGCGATTGTGCGGCACTATACGCGGTAA

Upstream 100 bases:

>100_bases
ACCGGCATATAAGCGACTTCAAGGACATCGGCCGGGTCTTTGGCCATCTTTGGCCATTGCCCTTGGAAGTGTCTGGTTGA
GCGCGTTTAGGAGGCAAGTG

Downstream 100 bases:

>100_bases
TCACAATGATGTTCTGCCTTACCTGATTGATTCGTCAAAAAGCACCAAAGCGTTTGTGTTACATGCTTTGATGCTTTTTT
CTTTGGCTTAGATTTAGGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: Stationary-phase regulation of katG protein [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTYSTKQLADLAGVTPRTLRYYDKIGLLKTQRDPDNQYRVYTQAEVDRLQTIRFLQLFEMPLAQVKVLLDGPAENLTAAL
KQQRKRITAKRDQLSLLLTTLDQTLEKGVDTMTDDEKFAAFKDQSIKANEQQYGEEIRQQYGDDIVEASNKKFRDMSQAQ
VAQLTALQQEILDALKPLVGTTDFNTPEAKRVFKLHKQFLQMTWPSEQYSQKAHRGLAAMYVSDPRFSKYYEDGTGKAGA
AETLNAIVRHYTR

Sequences:

>Translated_253_residues
MTYSTKQLADLAGVTPRTLRYYDKIGLLKTQRDPDNQYRVYTQAEVDRLQTIRFLQLFEMPLAQVKVLLDGPAENLTAAL
KQQRKRITAKRDQLSLLLTTLDQTLEKGVDTMTDDEKFAAFKDQSIKANEQQYGEEIRQQYGDDIVEASNKKFRDMSQAQ
VAQLTALQQEILDALKPLVGTTDFNTPEAKRVFKLHKQFLQMTWPSEQYSQKAHRGLAAMYVSDPRFSKYYEDGTGKAGA
AETLNAIVRHYTR
>Mature_252_residues
TYSTKQLADLAGVTPRTLRYYDKIGLLKTQRDPDNQYRVYTQAEVDRLQTIRFLQLFEMPLAQVKVLLDGPAENLTAALK
QQRKRITAKRDQLSLLLTTLDQTLEKGVDTMTDDEKFAAFKDQSIKANEQQYGEEIRQQYGDDIVEASNKKFRDMSQAQV
AQLTALQQEILDALKPLVGTTDFNTPEAKRVFKLHKQFLQMTWPSEQYSQKAHRGLAAMYVSDPRFSKYYEDGTGKAGAA
ETLNAIVRHYTR

Specific function: Regulates the induction of katG (catalase-peroxidase) in stationary phase [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR012925 [H]

Pfam domain/function: PF00376 MerR; PF07739 TipAS [H]

EC number: NA

Molecular weight: Translated: 29012; Mature: 28881

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCC
>Mature Secondary Structure 
TYSTKQLADLAGVTPRTLRYYDKIGLLKTQRDPDNQYRVYTQAEVDRLQTIRFLQLFEM
CCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHC
PLAQVKVLLDGPAENLTAALKQQRKRITAKRDQLSLLLTTLDQTLEKGVDTMTDDEKFAA
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
FKDQSIKANEQQYGEEIRQQYGDDIVEASNKKFRDMSQAQVAQLTALQQEILDALKPLVG
HCCCCCCCHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TTDFNTPEAKRVFKLHKQFLQMTWPSEQYSQKAHRGLAAMYVSDPRFSKYYEDGTGKAGA
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCH
AETLNAIVRHYTR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10498730 [H]