Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116495904

Identifier: 116495904

GI number: 116495904

Start: 2445135

End: 2445464

Strand: Direct

Name: 116495904

Synonym: LSEI_2460

Alternate gene names: NA

Gene position: 2445135-2445464 (Clockwise)

Preceding gene: 116495902

Following gene: 116495905

Centisome position: 84.45

GC content: 42.42

Gene sequence:

>330_bases
ATGAAAGCGACTTATAAAGATCAATCCGCCGAAGTTTGGGAAATTAGTAAAAACAACGAATTCCCTGACTGGGTCAAAGA
AGCTTTTGAAAAGAACTACCTTGTTTGGTTGGATGACCGACTTCGTATTTTAATGGCCGGTTTGTTTCCGCCAATGATCG
AAAGCTTACAACGTGACAAAGCCAGCATTTTTCACGCTCAAGGCGTTCAGTTTGGGGTCGTGACAATTGGCTATCTAGGT
GACTATTTGGACGTCACAAATCACCGCGTCGTCTCTAAGCAGCAGTTTGCTAGGCAGTATCGAATTGAAAAAACAGGCAA
CCAATTTTAA

Upstream 100 bases:

>100_bases
TTAACAAACAGCACAGTCATTCTTCCTTCCACAAATGGAACCTCAAAATCGCACAACTATTTAAACAAATAAATCCGACA
ATCCGAATGTGAGGATACTG

Downstream 100 bases:

>100_bases
TCCCACATTAAGTAAAAACGCATGTGAACAGACTAGTTCAGACTAGATGATCACATGCGTTTTTTTGGGTCTACACTTTC
TGGTGTTGAGAAATAATCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MKATYKDQSAEVWEISKNNEFPDWVKEAFEKNYLVWLDDRLRILMAGLFPPMIESLQRDKASIFHAQGVQFGVVTIGYLG
DYLDVTNHRVVSKQQFARQYRIEKTGNQF

Sequences:

>Translated_109_residues
MKATYKDQSAEVWEISKNNEFPDWVKEAFEKNYLVWLDDRLRILMAGLFPPMIESLQRDKASIFHAQGVQFGVVTIGYLG
DYLDVTNHRVVSKQQFARQYRIEKTGNQF
>Mature_109_residues
MKATYKDQSAEVWEISKNNEFPDWVKEAFEKNYLVWLDDRLRILMAGLFPPMIESLQRDKASIFHAQGVQFGVVTIGYLG
DYLDVTNHRVVSKQQFARQYRIEKTGNQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12806; Mature: 12806

Theoretical pI: Translated: 7.68; Mature: 7.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATYKDQSAEVWEISKNNEFPDWVKEAFEKNYLVWLDDRLRILMAGLFPPMIESLQRDK
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHH
ASIFHAQGVQFGVVTIGYLGDYLDVTNHRVVSKQQFARQYRIEKTGNQF
HHHHHHCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKATYKDQSAEVWEISKNNEFPDWVKEAFEKNYLVWLDDRLRILMAGLFPPMIESLQRDK
CCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEECHHHHHHHHHCCHHHHHHHHHHH
ASIFHAQGVQFGVVTIGYLGDYLDVTNHRVVSKQQFARQYRIEKTGNQF
HHHHHHCCCEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA