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The map label for this gene is 116495789

Identifier: 116495789

GI number: 116495789

Start: 2338204

End: 2339325

Strand: Direct

Name: 116495789

Synonym: LSEI_2337

Alternate gene names: NA

Gene position: 2338204-2339325 (Clockwise)

Preceding gene: 116495785

Following gene: 116495790

Centisome position: 80.76

GC content: 45.63

Gene sequence:

>1122_bases
ATGACCCAGTCGCATAAATCGGTTACGATGGTCGAGCTGTTCTATGATTTAATTTTTGCCTATGCCGTTGGCCGTATGGC
GCAAGCGCTTGCACTGCCGACACATGGTTTCATTGCTCCGCGTATGCTTGGTGAGTTTTTGATGATGCTACTTGTTTTCT
GGGTGATTTGGACTTACCAAACTGTCTTAGCCAACCGGTACTTTAACAACCAACTAGCCCAAAGTCTCTTTACTCTTTTT
AATATGTTCTGGGTCATCGTCTTGAGTACCGCCATCAACGTTGATTTCGTTAAAACAAAATGGTCCTTTCAATTGAGCAC
CGCCATTTTGTTTTTGAGTGTTGCGATTCAATATGGCCTGATCTGGCGGCAAAAACATGCTGCTTTACCCAAAATTTTTG
GTCTGACCTTAACAATTGCTGGCGCGCTGGCACTTGTATCGCCTTTCCTAACCCCATACTCGCTGTCATTCACGGTCTTC
TTTTTGGGCGTCGTGGGGGCCAGTTTTGTCCCGCTGCTTTTCTGGCGAACGATCAATGCTGCCCCGGTGAATTTTAGTCA
TTTGAGTGAGCGTTACTCGCTACTGGTCCTGCTGATTTTCGGAGAAGCGGTTATTGGCGTGGCCGATACGGTTTATAGCG
GCTTATCACTGCAGGCCGGTTTGTTTTTCTTTGTGGTTATATTGCTTTTTGTGGCTTATCAGCTAGTTTATGATAACGGC
CTTAACCGCCAGATAAAAACAGGCGGTTTGGCAGCTATTCATCTTCATTACCCGTTATTAGCGGCCATCCTTAGCATCAG
CACGTTTATCCACCTGTGGTTGACTCAGGAATTAGATCCGCGTTGGTTTGCCGCGGCGATTACCTTGGCTTTAGCTGTTT
ACTATTTTAGCCTGATTGGCTATTTGCGCGCCTATCCAACCAGCAAGATCGACATCGGCTTCAAGCGTTGGTTTTATTTA
GGGTTTTCACTCATGATTTTTGGGGTATACAGCTTCATGACGGCGGCTATGCCATTGCCATTTATGCTAGGCTTAACTGC
GTATTTGCTGGCCAATACCTTATATCTTTGGCAATTCATTCTCCATCCCAACGACCCGTTGTATAATGAAAGTGATCAAT
GA

Upstream 100 bases:

>100_bases
GCGCTCTGCATTTTTGCCGGAAAAGCTGGAAAATGATAGGCTACTATATATACGAGATCGGCGAAGGCTTGTCTCTTTGC
CATTAGAAAGAAGGATGCTC

Downstream 100 bases:

>100_bases
AGGGAGAATTCATATGACAACATATGATGTCACATTCAACACCGTCGATGGCAAGTCGCTGATTAAGCGCAACGTGGAAA
GCGACCACGAAAACGCCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Low Temperature Requirement Protein LtrA; Low Temperature Requirement A; Bacterial Low Temperature Requirement A

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MTQSHKSVTMVELFYDLIFAYAVGRMAQALALPTHGFIAPRMLGEFLMMLLVFWVIWTYQTVLANRYFNNQLAQSLFTLF
NMFWVIVLSTAINVDFVKTKWSFQLSTAILFLSVAIQYGLIWRQKHAALPKIFGLTLTIAGALALVSPFLTPYSLSFTVF
FLGVVGASFVPLLFWRTINAAPVNFSHLSERYSLLVLLIFGEAVIGVADTVYSGLSLQAGLFFFVVILLFVAYQLVYDNG
LNRQIKTGGLAAIHLHYPLLAAILSISTFIHLWLTQELDPRWFAAAITLALAVYYFSLIGYLRAYPTSKIDIGFKRWFYL
GFSLMIFGVYSFMTAAMPLPFMLGLTAYLLANTLYLWQFILHPNDPLYNESDQ

Sequences:

>Translated_373_residues
MTQSHKSVTMVELFYDLIFAYAVGRMAQALALPTHGFIAPRMLGEFLMMLLVFWVIWTYQTVLANRYFNNQLAQSLFTLF
NMFWVIVLSTAINVDFVKTKWSFQLSTAILFLSVAIQYGLIWRQKHAALPKIFGLTLTIAGALALVSPFLTPYSLSFTVF
FLGVVGASFVPLLFWRTINAAPVNFSHLSERYSLLVLLIFGEAVIGVADTVYSGLSLQAGLFFFVVILLFVAYQLVYDNG
LNRQIKTGGLAAIHLHYPLLAAILSISTFIHLWLTQELDPRWFAAAITLALAVYYFSLIGYLRAYPTSKIDIGFKRWFYL
GFSLMIFGVYSFMTAAMPLPFMLGLTAYLLANTLYLWQFILHPNDPLYNESDQ
>Mature_372_residues
TQSHKSVTMVELFYDLIFAYAVGRMAQALALPTHGFIAPRMLGEFLMMLLVFWVIWTYQTVLANRYFNNQLAQSLFTLFN
MFWVIVLSTAINVDFVKTKWSFQLSTAILFLSVAIQYGLIWRQKHAALPKIFGLTLTIAGALALVSPFLTPYSLSFTVFF
LGVVGASFVPLLFWRTINAAPVNFSHLSERYSLLVLLIFGEAVIGVADTVYSGLSLQAGLFFFVVILLFVAYQLVYDNGL
NRQIKTGGLAAIHLHYPLLAAILSISTFIHLWLTQELDPRWFAAAITLALAVYYFSLIGYLRAYPTSKIDIGFKRWFYLG
FSLMIFGVYSFMTAAMPLPFMLGLTAYLLANTLYLWQFILHPNDPLYNESDQ

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42262; Mature: 42130

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSHKSVTMVELFYDLIFAYAVGRMAQALALPTHGFIAPRMLGEFLMMLLVFWVIWTYQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TVLANRYFNNQLAQSLFTLFNMFWVIVLSTAINVDFVKTKWSFQLSTAILFLSVAIQYGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHH
IWRQKHAALPKIFGLTLTIAGALALVSPFLTPYSLSFTVFFLGVVGASFVPLLFWRTINA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APVNFSHLSERYSLLVLLIFGEAVIGVADTVYSGLSLQAGLFFFVVILLFVAYQLVYDNG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LNRQIKTGGLAAIHLHYPLLAAILSISTFIHLWLTQELDPRWFAAAITLALAVYYFSLIG
CCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLRAYPTSKIDIGFKRWFYLGFSLMIFGVYSFMTAAMPLPFMLGLTAYLLANTLYLWQFI
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LHPNDPLYNESDQ
HCCCCCCCCCCCC
>Mature Secondary Structure 
TQSHKSVTMVELFYDLIFAYAVGRMAQALALPTHGFIAPRMLGEFLMMLLVFWVIWTYQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TVLANRYFNNQLAQSLFTLFNMFWVIVLSTAINVDFVKTKWSFQLSTAILFLSVAIQYGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHH
IWRQKHAALPKIFGLTLTIAGALALVSPFLTPYSLSFTVFFLGVVGASFVPLLFWRTINA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APVNFSHLSERYSLLVLLIFGEAVIGVADTVYSGLSLQAGLFFFVVILLFVAYQLVYDNG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
LNRQIKTGGLAAIHLHYPLLAAILSISTFIHLWLTQELDPRWFAAAITLALAVYYFSLIG
CCCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YLRAYPTSKIDIGFKRWFYLGFSLMIFGVYSFMTAAMPLPFMLGLTAYLLANTLYLWQFI
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LHPNDPLYNESDQ
HCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA