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The map label for this gene is ydiF [H]

Identifier: 116495698

GI number: 116495698

Start: 2240924

End: 2242876

Strand: Direct

Name: ydiF [H]

Synonym: LSEI_2246

Alternate gene names: 116495698

Gene position: 2240924-2242876 (Clockwise)

Preceding gene: 116495694

Following gene: 116495705

Centisome position: 77.4

GC content: 45.67

Gene sequence:

>1953_bases
GTGATCATTTTGCAGGCGCAACAAGTTGGCCGCAGTTTTAACGGCAATGAATTATTTGCTAACGTCAACTTAGAAATTCA
AAACGGCGCGCGCATTGGCTTAGTCGGGCCCAACGGCATTGGCAAGACGACCCTGCTGGAGATCCTGACTGGTATTGCCC
CACCCGATGCTGGTCAGGTCACAACCATGAAGAACCTGTCAATTGGTTATTTAGCACAAAACTCAGGACTTGATTCTGAC
AAAACGATTTTTAAAGAAATGCTGACGGTCTTTGCACCATTACAAGCGATGGCTTGGCAAATACATGACTTAGAAGTTAA
ACTCGGTGATCCGCAACTCATCGCCGACAAAGAAGCTTTTGCGGCAACGATGAAACAATACGATCAATTGCAACATGACT
TTAACGAACAAAATGGTTATGGCTATGAAGCCGAAATTCGTTCCGTTTTACATGGTTTTCAGTTCGGCGAAACGACTTAT
GACAAGCCGGTTGGCACTTTATCTGGCGGTGAGCGGTCTCGATTGGCGCTGGCGAAGCTGCTACTCGAAAAACACGACTT
GATCATCCTTGACGAACCCACCAACCATCTTGACATTGAAACCTTGAGTTGGCTTGAAGGGTACTTAAAAACCTATCCGG
GCGCTATTTTAACTGTCAGTCATGACCAATATTTCCTCGATCACGTGGTCACTGAGATCTATGAATTAGATCATCACCAC
GCGACACATTACAAAACTAACTATAGCGGCTATCTTAAGCAAAAAGCTGATCGTCAAGCTCAAGCTTGGAAGGCTTACAA
TAAGCAGCAGGAAGAAATTGCCAAGCTGCAGGATTTTGTCGACAAGAATATTGTCCGCGCTAGCACCACCAAACAGGCTC
AAGCTCGACGTAAACAATTAGAAAAAATGGATGTGCTTGAAAAACCTGCTGGCGATAATAAGACGGTGCATTTTAACTTT
ACCCCAACGCGACCAAGCGGTAATGAAGTTTTAAAAGTCGAGCAGGCGACAGCTGGTTATGAGCCGGACAAACCCATGGC
TGGCCCGATTGACTTTCAAGTGAATAAGTTTGACCGAATTGCGATCATCGGACCAAATGGTGTTGGTAAATCTACTTTAC
TGAAAAGTGTTTTGGGAAAAATTCCTTTTCTTAAAGGAGATGCCAAGTTTGGTGCCAATGTTGACGTAGGCTATTACGAT
CAGGAAATTCAACAGCTTAACCCTAAAAACACTGTCATTGACGAAATCTGGGACGATCACCCGATGATGCCTGAGAAGGA
TGTCCGGTCCGTGCTCGCGGCCTTCCTTTTTTTGGCGGACGACATTCAAAAACCGGTCAGTGCCTTATCTGGCGGCCAAA
AAGCGCGGCTGGAACTCACTAAATTAGCGTTGAAACACGATAATTTCTTAGTGCTTGATGAACCGACCAACCATTTGGAC
ATCAACAGCAAAGAAGTCCTAGAACAGGCCTTAAAAGACTTCAGCGGGACTGTCTTATTTGTTTCGCATGACCGGTACTT
CATCAACGAGTTGGCAACAAATGTGGTCGCTATTGCCCCGACCGGCAGCACTACTTATCTGGGCAACTGGGATTACTATC
AAGAAAAACTCACCGAAACTCAGGCAGAAGCAGCCGCCGCAGCCGCTGCTCAGCCAACGGCAAAAACTGAAACTGCTGGT
GCGACCTCTTACCAGCAGTCCAAAGAAGACGCCCGCGCTGAACGCAAACTTCAGCGGGAAGTGGATGATTTAGAGCAGCA
ACTTCAAGATCTTAGCCAACAAGAGGCCAAAATTCAAAAAGCGATGACTGCACCAGACGTCCTCAGTGATTATGTCAAAA
TGCAAACACTGCAGACAGAACTCGAAACAGTTCAAAAACAAACAGCTAAAGTTGAAGACGCTTGGGAAGAAAAGGGCATT
CAACTGGAAGATATGCATGCTGATAACAATTAA

Upstream 100 bases:

>100_bases
GCAAATTTTTTATTATCCAGGGACCATCGGGGAACGCGCGCCGATGAGCGAAACTATGGTATATTAGGTTCTAACGATTA
TTGTGAAAGAAGGTATCCCT

Downstream 100 bases:

>100_bases
AACTGCTGTTCTTTAAATTCAAAATAGGCACGGCCAAAGATGGTCCTTGGTCGTGCCAAACTCCGCAATCTCCGGCCAGA
TGGGGTGGCGACGCATAGCT

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MIILQAQQVGRSFNGNELFANVNLEIQNGARIGLVGPNGIGKTTLLEILTGIAPPDAGQVTTMKNLSIGYLAQNSGLDSD
KTIFKEMLTVFAPLQAMAWQIHDLEVKLGDPQLIADKEAFAATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGETTY
DKPVGTLSGGERSRLALAKLLLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH
ATHYKTNYSGYLKQKADRQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQLEKMDVLEKPAGDNKTVHFNF
TPTRPSGNEVLKVEQATAGYEPDKPMAGPIDFQVNKFDRIAIIGPNGVGKSTLLKSVLGKIPFLKGDAKFGANVDVGYYD
QEIQQLNPKNTVIDEIWDDHPMMPEKDVRSVLAAFLFLADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD
INSKEVLEQALKDFSGTVLFVSHDRYFINELATNVVAIAPTGSTTYLGNWDYYQEKLTETQAEAAAAAAAQPTAKTETAG
ATSYQQSKEDARAERKLQREVDDLEQQLQDLSQQEAKIQKAMTAPDVLSDYVKMQTLQTELETVQKQTAKVEDAWEEKGI
QLEDMHADNN

Sequences:

>Translated_650_residues
MIILQAQQVGRSFNGNELFANVNLEIQNGARIGLVGPNGIGKTTLLEILTGIAPPDAGQVTTMKNLSIGYLAQNSGLDSD
KTIFKEMLTVFAPLQAMAWQIHDLEVKLGDPQLIADKEAFAATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGETTY
DKPVGTLSGGERSRLALAKLLLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH
ATHYKTNYSGYLKQKADRQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQLEKMDVLEKPAGDNKTVHFNF
TPTRPSGNEVLKVEQATAGYEPDKPMAGPIDFQVNKFDRIAIIGPNGVGKSTLLKSVLGKIPFLKGDAKFGANVDVGYYD
QEIQQLNPKNTVIDEIWDDHPMMPEKDVRSVLAAFLFLADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD
INSKEVLEQALKDFSGTVLFVSHDRYFINELATNVVAIAPTGSTTYLGNWDYYQEKLTETQAEAAAAAAAQPTAKTETAG
ATSYQQSKEDARAERKLQREVDDLEQQLQDLSQQEAKIQKAMTAPDVLSDYVKMQTLQTELETVQKQTAKVEDAWEEKGI
QLEDMHADNN
>Mature_650_residues
MIILQAQQVGRSFNGNELFANVNLEIQNGARIGLVGPNGIGKTTLLEILTGIAPPDAGQVTTMKNLSIGYLAQNSGLDSD
KTIFKEMLTVFAPLQAMAWQIHDLEVKLGDPQLIADKEAFAATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGETTY
DKPVGTLSGGERSRLALAKLLLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH
ATHYKTNYSGYLKQKADRQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQLEKMDVLEKPAGDNKTVHFNF
TPTRPSGNEVLKVEQATAGYEPDKPMAGPIDFQVNKFDRIAIIGPNGVGKSTLLKSVLGKIPFLKGDAKFGANVDVGYYD
QEIQQLNPKNTVIDEIWDDHPMMPEKDVRSVLAAFLFLADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD
INSKEVLEQALKDFSGTVLFVSHDRYFINELATNVVAIAPTGSTTYLGNWDYYQEKLTETQAEAAAAAAAQPTAKTETAG
ATSYQQSKEDARAERKLQREVDDLEQQLQDLSQQEAKIQKAMTAPDVLSDYVKMQTLQTELETVQKQTAKVEDAWEEKGI
QLEDMHADNN

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=534, Percent_Identity=30.7116104868914, Blast_Score=259, Evalue=8e-69,
Organism=Homo sapiens, GI27881506, Length=536, Percent_Identity=30.9701492537313, Blast_Score=232, Evalue=8e-61,
Organism=Homo sapiens, GI10947137, Length=536, Percent_Identity=30.9701492537313, Blast_Score=232, Evalue=1e-60,
Organism=Homo sapiens, GI69354671, Length=546, Percent_Identity=32.7838827838828, Blast_Score=231, Evalue=1e-60,
Organism=Homo sapiens, GI10947135, Length=550, Percent_Identity=32.5454545454545, Blast_Score=231, Evalue=2e-60,
Organism=Escherichia coli, GI1789751, Length=661, Percent_Identity=31.0136157337368, Blast_Score=311, Evalue=1e-85,
Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=33.5164835164835, Blast_Score=284, Evalue=1e-77,
Organism=Escherichia coli, GI2367384, Length=524, Percent_Identity=32.4427480916031, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1787182, Length=605, Percent_Identity=32.0661157024793, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1788165, Length=157, Percent_Identity=29.9363057324841, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87082267, Length=213, Percent_Identity=23.4741784037559, Blast_Score=66, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=32.2820037105751, Blast_Score=252, Evalue=5e-67,
Organism=Caenorhabditis elegans, GI17559834, Length=560, Percent_Identity=30.7142857142857, Blast_Score=230, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=29.5112781954887, Blast_Score=225, Evalue=4e-59,
Organism=Saccharomyces cerevisiae, GI6321121, Length=536, Percent_Identity=31.5298507462687, Blast_Score=256, Evalue=8e-69,
Organism=Saccharomyces cerevisiae, GI6320874, Length=545, Percent_Identity=31.5596330275229, Blast_Score=232, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6323278, Length=390, Percent_Identity=26.6666666666667, Blast_Score=127, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6325030, Length=399, Percent_Identity=28.3208020050125, Blast_Score=122, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=391, Percent_Identity=26.5984654731458, Blast_Score=120, Evalue=9e-28,
Organism=Drosophila melanogaster, GI24641342, Length=548, Percent_Identity=32.1167883211679, Blast_Score=264, Evalue=2e-70,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=32.5278810408922, Blast_Score=261, Evalue=2e-69,
Organism=Drosophila melanogaster, GI24642252, Length=549, Percent_Identity=28.7795992714025, Blast_Score=227, Evalue=2e-59,
Organism=Drosophila melanogaster, GI18859989, Length=549, Percent_Identity=28.7795992714025, Blast_Score=227, Evalue=2e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 72614; Mature: 72614

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILQAQQVGRSFNGNELFANVNLEIQNGARIGLVGPNGIGKTTLLEILTGIAPPDAGQV
CEEEECHHHCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
TTMKNLSIGYLAQNSGLDSDKTIFKEMLTVFAPLQAMAWQIHDLEVKLGDPQLIADKEAF
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEECHHHH
AATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGETTYDKPVGTLSGGERSRLALAKL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
LLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCC
ATHYKTNYSGYLKQKADRQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQL
CCCEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EKMDVLEKPAGDNKTVHFNFTPTRPSGNEVLKVEQATAGYEPDKPMAGPIDFQVNKFDRI
HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEECCCCEE
AIIGPNGVGKSTLLKSVLGKIPFLKGDAKFGANVDVGYYDQEIQQLNPKNTVIDEIWDDH
EEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCC
PMMPEKDVRSVLAAFLFLADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
INSKEVLEQALKDFSGTVLFVSHDRYFINELATNVVAIAPTGSTTYLGNWDYYQEKLTET
CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHH
QAEAAAAAAAQPTAKTETAGATSYQQSKEDARAERKLQREVDDLEQQLQDLSQQEAKIQK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMTAPDVLSDYVKMQTLQTELETVQKQTAKVEDAWEEKGIQLEDMHADNN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC
>Mature Secondary Structure
MIILQAQQVGRSFNGNELFANVNLEIQNGARIGLVGPNGIGKTTLLEILTGIAPPDAGQV
CEEEECHHHCCCCCCCEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
TTMKNLSIGYLAQNSGLDSDKTIFKEMLTVFAPLQAMAWQIHDLEVKLGDPQLIADKEAF
EEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCEEECHHHH
AATMKQYDQLQHDFNEQNGYGYEAEIRSVLHGFQFGETTYDKPVGTLSGGERSRLALAKL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
LLEKHDLIILDEPTNHLDIETLSWLEGYLKTYPGAILTVSHDQYFLDHVVTEIYELDHHH
HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCC
ATHYKTNYSGYLKQKADRQAQAWKAYNKQQEEIAKLQDFVDKNIVRASTTKQAQARRKQL
CCCEECCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EKMDVLEKPAGDNKTVHFNFTPTRPSGNEVLKVEQATAGYEPDKPMAGPIDFQVNKFDRI
HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCEEECCCCEE
AIIGPNGVGKSTLLKSVLGKIPFLKGDAKFGANVDVGYYDQEIQQLNPKNTVIDEIWDDH
EEECCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCC
PMMPEKDVRSVLAAFLFLADDIQKPVSALSGGQKARLELTKLALKHDNFLVLDEPTNHLD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC
INSKEVLEQALKDFSGTVLFVSHDRYFINELATNVVAIAPTGSTTYLGNWDYYQEKLTET
CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCEEEEECCCCEEEECCHHHHHHHHHHH
QAEAAAAAAAQPTAKTETAGATSYQQSKEDARAERKLQREVDDLEQQLQDLSQQEAKIQK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMTAPDVLSDYVKMQTLQTELETVQKQTAKVEDAWEEKGIQLEDMHADNN
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]