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The map label for this gene is rpmB

Identifier: 116495100

GI number: 116495100

Start: 1618117

End: 1618302

Strand: Direct

Name: rpmB

Synonym: LSEI_1618

Alternate gene names: 116495100

Gene position: 1618117-1618302 (Clockwise)

Preceding gene: 116495086

Following gene: 116495113

Centisome position: 55.89

GC content: 47.85

Gene sequence:

>186_bases
GTGGCTAAAGATATTATTACTGGTCGTCATACCACGTTTGGCAACAAGCGTTCTCACGCTTTGAATTCAAGCCGGCGCCA
ATGGAAAGCCAACCTGCACAAGGTTCGTATTCTTGTCGATGGTAAACCAAAGCGGGTATGGGTTTCTGCACGTGCCCTTA
AATCAGGTAAACTGACCCGGGTTTGA

Upstream 100 bases:

>100_bases
TAATTTTACTTTGCAAAAATTCTTGCATTAACCGCGGGCCTATGATAAGTTAGTTGAGTGAAAAATTCGAGGGTGACCTT
GAAAAAAAGGAGGTCATATT

Downstream 100 bases:

>100_bases
TCCCATAACATTTAAAAAGGTCCTGACAATGAATGTGATGCATCCTTCATTGTCAGGACCTTTTTTTGTTGAGCGCGAGC
AGGAGCGATTAGAAACCGGA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 61; Mature: 60

Protein sequence:

>61_residues
MAKDIITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKLTRV

Sequences:

>Translated_61_residues
MAKDIITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKLTRV
>Mature_60_residues
AKDIITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKLTRV

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_LACC3 (Q038I0)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806834.1
- ProteinModelPortal:   Q038I0
- SMR:   Q038I0
- STRING:   Q038I0
- GeneID:   4419018
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_1618
- eggNOG:   COG0227
- HOGENOM:   HBG597003
- OMA:   KCYVTGK
- ProtClustDB:   PRK00359
- BioCyc:   LCAS321967:LSEI_1618-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 6977; Mature: 6846

Theoretical pI: Translated: 12.74; Mature: 12.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDIITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKLTR
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
V
C
>Mature Secondary Structure 
AKDIITGRHTTFGNKRSHALNSSRRQWKANLHKVRILVDGKPKRVWVSARALKSGKLTR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEECCCCCEEEEEEECCCCCCCCC
V
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA