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The map label for this gene is yfmR [H]

Identifier: 116494872

GI number: 116494872

Start: 1374412

End: 1376304

Strand: Direct

Name: yfmR [H]

Synonym: LSEI_1386

Alternate gene names: 116494872

Gene position: 1374412-1376304 (Clockwise)

Preceding gene: 116494871

Following gene: 116494873

Centisome position: 47.47

GC content: 47.12

Gene sequence:

>1893_bases
ATGCAGACGCTAACAGCGCAAGGCCTGAGTAAGGCATATGGTGACAAACAATTATTCAATCAGATTGATTTTTTAATTAA
CGAAGGCGAGCGAATTGGCTTAATTGGGGTGAATGGCGCTGGGAAAACCACGCTTATTCGCGCATTAGCCGGACTTGATT
CAGTTGATGCTGGTGAAATTAAAACACCCAAGCAATATCGCATCAGCTATCTGGCTCAGATTCCCGATCTTGATCCTGAC
TTGGCGATTATGGATGCCATTTATCATGGTGACTCACCGGTTTTTCAAGCGATTCGCCAATATGAACAAGCACTAGCCGA
ATATACCAAGGATCCTATGAATCCGGAAAAAACTGCCGCTTATACAAAAGCAGATGCCCGCATGACGCAAGAAGATGCCT
GGTCTGCAGAAACCGATATCAAAACAATTTTGACGCAGCTGCACATTGATGATTTGAGCATGCGTGTTGGCGATCTTTCC
GGTGGTCAGCAAAAGCGTGTCGGTCTTGCCCAAGTGCTGATCGAATCGCCGGACTTATTGCTGTTGGACGAGCCGACGAA
CCACTTGGATTTCGATTCAATCGCGTGGCTTGAGAAGTATCTCAGCAATTATCGCGGCGCTTTGGTCGTGGTAACGCATG
ATCGTTATTTTCTTGATCGCGTGACGAACCGGATTTTTGAATTGGACCGCGGCCGTTTATTCCAGTATCAAGGCAACTAT
CAGGCTTATGTCGCCAAAAAGGCTGAGCAATTGGAGGCCGAAAAGTCGGCTAATCACAAGCAGGCCCAGCTTTACAAGCA
GGAACTAGCTTGGATGCATGCTGGTGCCCAGGCACGTTCAACGAAACAACAAGCGCGCATCAACCGCTTTCAGACCTTGC
AAGCTGCCAAAGATGCGGCACCGGAAGCAAACCAGCAGTTGGATCCCATTCAGATCGCCAGCGCCCGCTTAGGCAAAAAA
GTCATCGAAATGCATCATGCCAGTTTGCAGTTTGACGATCAGCCGATTCTAAAAGACTTTAATTGGCTGGTTCAACCAGG
CACTCGCATTGGGATTACCGGCAAAAACGGCGCTGGCAAGTCAACATTGCTGAATATTATTGCTGGCAAACAAAAATTGG
ACAGCGGATCTATTGAATTAGGCGAGACCGTTCATTTGGGCTACTACACCCAGATGAGTGCCAATTTGGATCCGAACAAA
CGCATCATCACCTACTTGCAGGAGGTTGGCGAAGAAGTCGTGCAAGCAGATGGTCAACGCGTGTCAGTAACCCAAATGCT
GGAACAATTTCTTTTTCCGCGCAGTATGCATGGTACGCTGATTGGTCGCTTGTCAGGCGGCGAAAAACGCCGGCTTTATT
TGTTACAGGTGCTCATGCGTCAACCTAATGTTTTGCTTTTGGACGAGCCAACCAATGATCTAGATATTGCCACCTTGACC
GTACTCGAAGATTATCTGGATCAATTTCCAGGCACCGTCATCACCGTGTCACATGACCGTTACTTTTTGGACAAAGTGGC
TGATCAATTGCTGATCTTCAATGGCAACGCGCGGATTGACCGAGCGGTAGGCGAATTCTCTGATTATCTGGCTCAGCAAC
AAACCAAGCAGCCGGCAGCCAAACCAAAAACATCAGCTACTGACGCTGTACCGAAAAAAGCCGCGCCAAAGAAGAAAACA
AAACTGACATATGCTGAGCAGATAGAGTATGATAAACTCCAAAATGAGCTTGACGAGTTGGACGATAAACTCGCCAAAGT
CAAGGCAGCTATGGCCGAAGTCAACGGTGAAGATTATGTCAAACTAGGTGACTTACAAGCCCAAATTGACAAGATCAACC
AAACAATTGATAAAAAATTCGACCGATTTGCCGAACTGGATCAGTATGTTTGA

Upstream 100 bases:

>100_bases
TCTAATCGTGATCACGTACGGGTCGGCATTGATGTCGGCCTTTTCTTGTGCGCTGCTTCTTGCTAAGATGGACAACGATA
CGAGTGAAATGAGGGACAAC

Downstream 100 bases:

>100_bases
ACACACGCCCACTGGAGGGAAGAAGACAATGTTAGAGCAGCCATATCTTGATCTTGCCCAAAAAGTATTAGATGAAGGCC
ATTTCAAGCCTGATCGTACG

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 630; Mature: 630

Protein sequence:

>630_residues
MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGAGKTTLIRALAGLDSVDAGEIKTPKQYRISYLAQIPDLDPD
LAIMDAIYHGDSPVFQAIRQYEQALAEYTKDPMNPEKTAAYTKADARMTQEDAWSAETDIKTILTQLHIDDLSMRVGDLS
GGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLEKYLSNYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY
QAYVAKKAEQLEAEKSANHKQAQLYKQELAWMHAGAQARSTKQQARINRFQTLQAAKDAAPEANQQLDPIQIASARLGKK
VIEMHHASLQFDDQPILKDFNWLVQPGTRIGITGKNGAGKSTLLNIIAGKQKLDSGSIELGETVHLGYYTQMSANLDPNK
RIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT
VLEDYLDQFPGTVITVSHDRYFLDKVADQLLIFNGNARIDRAVGEFSDYLAQQQTKQPAAKPKTSATDAVPKKAAPKKKT
KLTYAEQIEYDKLQNELDELDDKLAKVKAAMAEVNGEDYVKLGDLQAQIDKINQTIDKKFDRFAELDQYV

Sequences:

>Translated_630_residues
MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGAGKTTLIRALAGLDSVDAGEIKTPKQYRISYLAQIPDLDPD
LAIMDAIYHGDSPVFQAIRQYEQALAEYTKDPMNPEKTAAYTKADARMTQEDAWSAETDIKTILTQLHIDDLSMRVGDLS
GGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLEKYLSNYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY
QAYVAKKAEQLEAEKSANHKQAQLYKQELAWMHAGAQARSTKQQARINRFQTLQAAKDAAPEANQQLDPIQIASARLGKK
VIEMHHASLQFDDQPILKDFNWLVQPGTRIGITGKNGAGKSTLLNIIAGKQKLDSGSIELGETVHLGYYTQMSANLDPNK
RIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT
VLEDYLDQFPGTVITVSHDRYFLDKVADQLLIFNGNARIDRAVGEFSDYLAQQQTKQPAAKPKTSATDAVPKKAAPKKKT
KLTYAEQIEYDKLQNELDELDDKLAKVKAAMAEVNGEDYVKLGDLQAQIDKINQTIDKKFDRFAELDQYV
>Mature_630_residues
MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGAGKTTLIRALAGLDSVDAGEIKTPKQYRISYLAQIPDLDPD
LAIMDAIYHGDSPVFQAIRQYEQALAEYTKDPMNPEKTAAYTKADARMTQEDAWSAETDIKTILTQLHIDDLSMRVGDLS
GGQQKRVGLAQVLIESPDLLLLDEPTNHLDFDSIAWLEKYLSNYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY
QAYVAKKAEQLEAEKSANHKQAQLYKQELAWMHAGAQARSTKQQARINRFQTLQAAKDAAPEANQQLDPIQIASARLGKK
VIEMHHASLQFDDQPILKDFNWLVQPGTRIGITGKNGAGKSTLLNIIAGKQKLDSGSIELGETVHLGYYTQMSANLDPNK
RIITYLQEVGEEVVQADGQRVSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT
VLEDYLDQFPGTVITVSHDRYFLDKVADQLLIFNGNARIDRAVGEFSDYLAQQQTKQPAAKPKTSATDAVPKKAAPKKKT
KLTYAEQIEYDKLQNELDELDDKLAKVKAAMAEVNGEDYVKLGDLQAQIDKINQTIDKKFDRFAELDQYV

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=541, Percent_Identity=28.0961182994455, Blast_Score=185, Evalue=1e-46,
Organism=Homo sapiens, GI10947135, Length=544, Percent_Identity=30.3308823529412, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI69354671, Length=544, Percent_Identity=30.3308823529412, Blast_Score=184, Evalue=2e-46,
Organism=Homo sapiens, GI10947137, Length=516, Percent_Identity=28.4883720930233, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI27881506, Length=516, Percent_Identity=28.4883720930233, Blast_Score=178, Evalue=2e-44,
Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=28.9719626168224, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=551, Percent_Identity=35.7531760435572, Blast_Score=353, Evalue=2e-98,
Organism=Escherichia coli, GI1787182, Length=637, Percent_Identity=32.182103610675, Blast_Score=326, Evalue=3e-90,
Organism=Escherichia coli, GI1789751, Length=614, Percent_Identity=30.7817589576547, Blast_Score=269, Evalue=4e-73,
Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=28.9377289377289, Blast_Score=237, Evalue=1e-63,
Organism=Escherichia coli, GI87081782, Length=561, Percent_Identity=26.0249554367201, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786975, Length=491, Percent_Identity=24.847250509165, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI48995001, Length=525, Percent_Identity=23.047619047619, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787029, Length=250, Percent_Identity=25.6, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789891, Length=255, Percent_Identity=28.6274509803922, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1790467, Length=250, Percent_Identity=26, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=203, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=26.6666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=241, Percent_Identity=27.8008298755187, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790739, Length=243, Percent_Identity=25.5144032921811, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=223, Percent_Identity=26.9058295964126, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=30.1020408163265, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI145693107, Length=549, Percent_Identity=22.7686703096539, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081709, Length=211, Percent_Identity=25.5924170616114, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48994883, Length=239, Percent_Identity=24.6861924686192, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786563, Length=193, Percent_Identity=27.979274611399, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1787164, Length=216, Percent_Identity=25.9259259259259, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=543, Percent_Identity=28.1767955801105, Blast_Score=202, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI17555318, Length=551, Percent_Identity=27.9491833030853, Blast_Score=193, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17553372, Length=513, Percent_Identity=30.2144249512671, Blast_Score=182, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI17541710, Length=330, Percent_Identity=26.3636363636364, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569145, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=29.9242424242424, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6321121, Length=546, Percent_Identity=27.1062271062271, Blast_Score=178, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6323278, Length=385, Percent_Identity=25.974025974026, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=387, Percent_Identity=26.3565891472868, Blast_Score=127, Evalue=8e-30,
Organism=Saccharomyces cerevisiae, GI6325030, Length=237, Percent_Identity=28.2700421940928, Blast_Score=96, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6323217, Length=257, Percent_Identity=25.6809338521401, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6324985, Length=271, Percent_Identity=23.9852398523985, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666836, Length=526, Percent_Identity=30.6083650190114, Blast_Score=220, Evalue=3e-57,
Organism=Drosophila melanogaster, GI24641342, Length=551, Percent_Identity=28.6751361161525, Blast_Score=202, Evalue=4e-52,
Organism=Drosophila melanogaster, GI24642252, Length=542, Percent_Identity=27.859778597786, Blast_Score=187, Evalue=2e-47,
Organism=Drosophila melanogaster, GI18859989, Length=542, Percent_Identity=27.859778597786, Blast_Score=187, Evalue=2e-47,
Organism=Drosophila melanogaster, GI28574150, Length=243, Percent_Identity=24.6913580246914, Blast_Score=77, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007328, Length=243, Percent_Identity=24.6913580246914, Blast_Score=77, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70713; Mature: 70713

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGAGKTTLIRALAGLDSVDAGEI
CCCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCC
KTPKQYRISYLAQIPDLDPDLAIMDAIYHGDSPVFQAIRQYEQALAEYTKDPMNPEKTAA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
YTKADARMTQEDAWSAETDIKTILTQLHIDDLSMRVGDLSGGQQKRVGLAQVLIESPDLL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEE
LLDEPTNHLDFDSIAWLEKYLSNYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY
EEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCC
QAYVAKKAEQLEAEKSANHKQAQLYKQELAWMHAGAQARSTKQQARINRFQTLQAAKDAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PEANQQLDPIQIASARLGKKVIEMHHASLQFDDQPILKDFNWLVQPGTRIGITGKNGAGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCH
STLLNIIAGKQKLDSGSIELGETVHLGYYTQMSANLDPNKRIITYLQEVGEEVVQADGQR
HHHHHHHHCCHHCCCCCEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE
VSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT
EEHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
VLEDYLDQFPGTVITVSHDRYFLDKVADQLLIFNGNARIDRAVGEFSDYLAQQQTKQPAA
HHHHHHHHCCCEEEEEECCHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
KPKTSATDAVPKKAAPKKKTKLTYAEQIEYDKLQNELDELDDKLAKVKAAMAEVNGEDYV
CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
KLGDLQAQIDKINQTIDKKFDRFAELDQYV
EECHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQTLTAQGLSKAYGDKQLFNQIDFLINEGERIGLIGVNGAGKTTLIRALAGLDSVDAGEI
CCCCCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCC
KTPKQYRISYLAQIPDLDPDLAIMDAIYHGDSPVFQAIRQYEQALAEYTKDPMNPEKTAA
CCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
YTKADARMTQEDAWSAETDIKTILTQLHIDDLSMRVGDLSGGQQKRVGLAQVLIESPDLL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEE
LLDEPTNHLDFDSIAWLEKYLSNYRGALVVVTHDRYFLDRVTNRIFELDRGRLFQYQGNY
EEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCC
QAYVAKKAEQLEAEKSANHKQAQLYKQELAWMHAGAQARSTKQQARINRFQTLQAAKDAA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
PEANQQLDPIQIASARLGKKVIEMHHASLQFDDQPILKDFNWLVQPGTRIGITGKNGAGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCH
STLLNIIAGKQKLDSGSIELGETVHLGYYTQMSANLDPNKRIITYLQEVGEEVVQADGQR
HHHHHHHHCCHHCCCCCEECCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE
VSVTQMLEQFLFPRSMHGTLIGRLSGGEKRRLYLLQVLMRQPNVLLLDEPTNDLDIATLT
EEHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
VLEDYLDQFPGTVITVSHDRYFLDKVADQLLIFNGNARIDRAVGEFSDYLAQQQTKQPAA
HHHHHHHHCCCEEEEEECCHHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
KPKTSATDAVPKKAAPKKKTKLTYAEQIEYDKLQNELDELDDKLAKVKAAMAEVNGEDYV
CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
KLGDLQAQIDKINQTIDKKFDRFAELDQYV
EECHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]